|
4D8O
Crystal Structure of the ankyrin-B ZU5-ZU5-UPA-DD tandem
Deposited 2012-01-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
966–1210(245 aa)
Fragment:residues 966-1535
Chain A
1253–1568(316 aa)
Fragment:residues 966-1535
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;289 K;18% PEG3350, 0.2M ammonium acetate, 5% n-Octyl-beta-D-glucoside, pH 7.5, vapor diffusion, hanging drop, temperature 289K
|
Resolution 2.20 Å
R-free 0.245
|
|
4RLV
Crystal Structure of AnkB 24 Ankyrin Repeats in Complex with AnkR Autoinhibition Segment
Deposited 2014-10-18
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
28–873(846 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;289 K;0.5 M ammonium sulfate, 1.0 M lithium sulfate, and 0.1 M sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 3.49 Å
R-free 0.253
|
|
5Y4D
Crystal Structure of AnkB Ankyrin Repeats in Complex with AnkR/AnkB Chimeric Autoinhibition Segment
Deposited 2017-08-03
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
3707–3718(12 aa)
Fragment:UNP RESIDUES 1577-1613,UNP RESIDUES 3707-3718,UNP RESIDUES 28-693
Chain A
28–693(666 aa)
Fragment:UNP RESIDUES 1577-1613,UNP RESIDUES 3707-3718,UNP RESIDUES 28-693
|
Not recorded
|
SO4 SULFATE ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;289 K;4 M ammonium acetate, 0.1 M Bis-Tris propane (pH 7.0)
|
Resolution 3.30 Å
R-free 0.229
|
|
5Y4E
Crystal Structure of AnkB Ankyrin Repeats R8-14 in complex with autoinhibition segment AI-b
Deposited 2017-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
857–896(40 aa)
Fragment:UNP RESIDUES 857-896,UNP RESIDUES 264-483
Chain A
264–483(220 aa)
Fragment:UNP RESIDUES 857-896,UNP RESIDUES 264-483
|
Not recorded
|
GOL GLYCEROL × 2
SO4 SULFATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;289 K;0.1 M HEPES (pH 7.0), 1 M ammonium sulfate, 0.5% w/v PEG 8000
|
Resolution 2.34 Å
R-free 0.233
|
|
5Y4E
Crystal Structure of AnkB Ankyrin Repeats R8-14 in complex with autoinhibition segment AI-b
Deposited 2017-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
857–896(40 aa)
Fragment:UNP RESIDUES 857-896,UNP RESIDUES 264-483
Chain B
264–483(220 aa)
Fragment:UNP RESIDUES 857-896,UNP RESIDUES 264-483
|
Not recorded
|
SO4 SULFATE ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;289 K;0.1 M HEPES (pH 7.0), 1 M ammonium sulfate, 0.5% w/v PEG 8000
|
Resolution 2.34 Å
R-free 0.233
|
|
5Y4F
Crystal Structure of AnkB Ankyrin Repeats R13-24 in complex with autoinhibition segment AI-c
Deposited 2017-08-03
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
430–873(444 aa)
Fragment:UNP RESIDUES 430-873
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;289 K;0.2 M CaCl2, 0.1 M HEPES (pH 7.5), 28% v/v PEG 400
|
Resolution 1.95 Å
R-free 0.220
|
|
5Y4F
Crystal Structure of AnkB Ankyrin Repeats R13-24 in complex with autoinhibition segment AI-c
Deposited 2017-08-03
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
430–873(444 aa)
Fragment:UNP RESIDUES 430-873
|
Not recorded
|
CA CALCIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;289 K;0.2 M CaCl2, 0.1 M HEPES (pH 7.5), 28% v/v PEG 400
|
Resolution 1.95 Å
R-free 0.220
|
|
5YIR
Crystal Structure of AnkB LIR/GABARAP complex
Deposited 2017-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1588–1614(27 aa)
Fragment:UNP RESIDUES 1588-1614
|
Not recorded
|
NI NICKEL (II) ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;289 K;12% w/v PEG 3350, 5 mM CoCl2, 5 mM NiCl2, 5 mM CdCl2, 5 mM MgCl2, 0.1 M HEPES buffer (pH 7.5)
|
Resolution 2.75 Å
R-free 0.224
|
|
5YIR
Crystal Structure of AnkB LIR/GABARAP complex
Deposited 2017-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
1588–1614(27 aa)
Fragment:UNP RESIDUES 1588-1614
|
Not recorded
|
NI NICKEL (II) ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;289 K;12% w/v PEG 3350, 5 mM CoCl2, 5 mM NiCl2, 5 mM CdCl2, 5 mM MgCl2, 0.1 M HEPES buffer (pH 7.5)
|
Resolution 2.75 Å
R-free 0.224
|
|
5YIR
Crystal Structure of AnkB LIR/GABARAP complex
Deposited 2017-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
1588–1614(27 aa)
Fragment:UNP RESIDUES 1588-1614
|
Not recorded
|
NI NICKEL (II) ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;289 K;12% w/v PEG 3350, 5 mM CoCl2, 5 mM NiCl2, 5 mM CdCl2, 5 mM MgCl2, 0.1 M HEPES buffer (pH 7.5)
|
Resolution 2.75 Å
R-free 0.224
|
|
5YIS
Crystal Structure of AnkB LIR/LC3B complex
Deposited 2017-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1588–1614(27 aa)
Fragment:UNP RESIDUES 1588-1614
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;289 K;2.4 M ammonium phosphate dibasic, 0.1 M Tris buffer (pH 8.5)
|
Resolution 2.20 Å
R-free 0.250
|
|
5YIS
Crystal Structure of AnkB LIR/LC3B complex
Deposited 2017-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
1588–1614(27 aa)
Fragment:UNP RESIDUES 1588-1614
|
Not recorded
|
GOL GLYCEROL × 1
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;289 K;2.4 M ammonium phosphate dibasic, 0.1 M Tris buffer (pH 8.5)
|
Resolution 2.20 Å
R-free 0.250
|
|
6KZJ
Crystal structure of Ankyrin B/NdeL1 complex
Deposited 2019-09-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1499–1570(72 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.6;289 K;1.9M ammonium sulfate,
0.16M potassium sodium tartrate tetrahydrate,
0.1M sodium citrate tribasic dehydrate pH 5.6
|
Resolution 1.50 Å
R-free 0.211
|
|
6M3Q
Crystal structure of AnkB/beta4-spectrin complex
Deposited 2020-03-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
951–1458(508 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;289 K;25% w/v pentaerythritol propoxylate 629 (17/8 PO/OH), 50 mM magnesium chloride and 0.1 M HEPES, pH 7.5
|
Resolution 3.44 Å
R-free 0.307
|
|
8ZE8
Arf-GTPase activating protein Asap1 SH3 domain in complex with 440 Kd Ankyrin-B fragment
Deposited 2024-05-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
1699–1710(12 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;289.15 K;0.1 M MES monohydrate, pH=6.0, 20 % w/v Polyethylene glycol 6,000
|
Resolution 2.07 Å
R-free 0.226
|
|
8ZE8
Arf-GTPase activating protein Asap1 SH3 domain in complex with 440 Kd Ankyrin-B fragment
Deposited 2024-05-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1699–1710(12 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;289.15 K;0.1 M MES monohydrate, pH=6.0, 20 % w/v Polyethylene glycol 6,000
|
Resolution 2.07 Å
R-free 0.226
|
|
8ZE8
Arf-GTPase activating protein Asap1 SH3 domain in complex with 440 Kd Ankyrin-B fragment
Deposited 2024-05-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
1699–1710(12 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;289.15 K;0.1 M MES monohydrate, pH=6.0, 20 % w/v Polyethylene glycol 6,000
|
Resolution 2.07 Å
R-free 0.226
|
|
8ZE8
Arf-GTPase activating protein Asap1 SH3 domain in complex with 440 Kd Ankyrin-B fragment
Deposited 2024-05-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
1699–1710(12 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;289.15 K;0.1 M MES monohydrate, pH=6.0, 20 % w/v Polyethylene glycol 6,000
|
Resolution 2.07 Å
R-free 0.226
|