5bo4

Structure of SOCS2:Elongin C:Elongin B from DMSO-treated crystals

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Suppressor of cytokine signaling 2

Homo sapiens

UniProt O14508

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Transcription elongation factor B polypeptide 2 × 1 (Q15370) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 Transcription elongation factor B polypeptide 2 × 1 (Q15370) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 3 Transcription elongation factor B polypeptide 2 × 1 (Q15370) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 2 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 3 Transcription elongation factor B polypeptide 2 × 1 (Q15370) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 1 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 3 Transcription elongation factor B polypeptide 2 × 1 (Q15370) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 3 Transcription elongation factor B polypeptide 2 × 1 (Q15370) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SOCS2_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–169; UniProt 32–198 Author chain D; PDBConstruct 3–169; UniProt 32–198 Author chain G; PDBConstruct 3–169; UniProt 32–198 Author chain J; PDBConstruct 3–169; UniProt 32–198 Author chain M; PDBConstruct 3–169; UniProt 32–198 Author chain P; PDBConstruct 3–169; UniProt 32–198

Transcription elongation factor B polypeptide 2

Homo sapiens

UniProt Q15370

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 2 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 1 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 1 × 1 (Q15369) water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ELOB_HUMAN
Isoform Q15370-2
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–104; UniProt 1–104 Author chain E; PDBConstruct 1–104; UniProt 1–104 Author chain H; PDBConstruct 1–104; UniProt 1–104 Author chain K; PDBConstruct 1–104; UniProt 1–104 Author chain N; PDBConstruct 1–104; UniProt 1–104 Author chain Q; PDBConstruct 1–104; UniProt 1–104

Transcription elongation factor B polypeptide 1

Homo sapiens

UniProt Q15369

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 2 × 1 (Q15370) water × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 2 × 1 (Q15370) water × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 2 × 1 (Q15370) water × 2 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 2 × 1 (Q15370) water × 1 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 2 × 1 (Q15370) water × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 3 Suppressor of cytokine signaling 2 × 1 (O14508) Transcription elongation factor B polypeptide 2 × 1 (Q15370) water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ELOC_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 2–97; UniProt 17–112 Author chain F; PDBConstruct 2–97; UniProt 17–112 Author chain I; PDBConstruct 2–97; UniProt 17–112 Author chain L; PDBConstruct 2–97; UniProt 17–112 Author chain O; PDBConstruct 2–97; UniProt 17–112 Author chain R; PDBConstruct 2–97; UniProt 17–112

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5bo4
Deposition date deposition_date2015-05-27
Structure title titleStructure of SOCS2:Elongin C:Elongin B from DMSO-treated crystals
Keywords keywordsSignaling Protein, Ubiquitin Ligase, Suppressor of Cytokine Signalling; SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5bo4__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5bo4__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5bo4__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)24.04 Å
Rg (electron density)23.06 Å
Total Rg23.94 Å
Atom count2530
Residues340
Excluded volume45445 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5bo4__assembly_1__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 5bo4__assembly_2__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 5bo4__assembly_3__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 5bo4__assembly_4__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 5bo4__assembly_5__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 5bo4__assembly_6__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 54 domains

SCOP 2.08 (30 domains)

Domain ID domain_idd5bo4a1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.93 — SH2-like
Superfamily Superfamily superfamilyd.93.1 — SH2 domain
Family Family familyd.93.1.1 — SH2 domain
Domain ID domain_idd5bo4a2
Class classa — All alpha proteins
Fold Fold folda.271 — SOCS box-like
Superfamily Superfamily superfamilya.271.1 — SOCS box-like
Family Family familya.271.1.1 — SOCS box-like
Domain ID domain_idd5bo4a3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd5bo4b_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.1 — Ubiquitin-like
Family Family familyd.15.1.1 — Ubiquitin-related
Domain ID domain_idd5bo4c1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.42 — POZ domain
Superfamily Superfamily superfamilyd.42.1 — POZ domain
Family Family familyd.42.1.1 — BTB/POZ domain
Domain ID domain_idd5bo4c2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd5bo4d1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.93 — SH2-like
Superfamily Superfamily superfamilyd.93.1 — SH2 domain
Family Family familyd.93.1.1 — SH2 domain
Domain ID domain_idd5bo4d2
Class classa — All alpha proteins
Fold Fold folda.271 — SOCS box-like
Superfamily Superfamily superfamilya.271.1 — SOCS box-like
Family Family familya.271.1.1 — SOCS box-like
Domain ID domain_idd5bo4d3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd5bo4e_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.1 — Ubiquitin-like
Family Family familyd.15.1.1 — Ubiquitin-related
Domain ID domain_idd5bo4f_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.42 — POZ domain
Superfamily Superfamily superfamilyd.42.1 — POZ domain
Family Family familyd.42.1.1 — BTB/POZ domain
Domain ID domain_idd5bo4g1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.93 — SH2-like
Superfamily Superfamily superfamilyd.93.1 — SH2 domain
Family Family familyd.93.1.1 — SH2 domain
Domain ID domain_idd5bo4g2
Class classa — All alpha proteins
Fold Fold folda.271 — SOCS box-like
Superfamily Superfamily superfamilya.271.1 — SOCS box-like
Family Family familya.271.1.1 — SOCS box-like
Domain ID domain_idd5bo4g3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd5bo4h_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.1 — Ubiquitin-like
Family Family familyd.15.1.1 — Ubiquitin-related
Domain ID domain_idd5bo4i1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.42 — POZ domain
Superfamily Superfamily superfamilyd.42.1 — POZ domain
Family Family familyd.42.1.1 — BTB/POZ domain
Domain ID domain_idd5bo4i2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd5bo4j1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.93 — SH2-like
Superfamily Superfamily superfamilyd.93.1 — SH2 domain
Family Family familyd.93.1.1 — SH2 domain
Domain ID domain_idd5bo4j2
Class classa — All alpha proteins
Fold Fold folda.271 — SOCS box-like
Superfamily Superfamily superfamilya.271.1 — SOCS box-like
Family Family familya.271.1.1 — SOCS box-like
Domain ID domain_idd5bo4j3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd5bo4k_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.1 — Ubiquitin-like
Family Family familyd.15.1.1 — Ubiquitin-related
Domain ID domain_idd5bo4l1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.42 — POZ domain
Superfamily Superfamily superfamilyd.42.1 — POZ domain
Family Family familyd.42.1.1 — BTB/POZ domain
Domain ID domain_idd5bo4l2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd5bo4m1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.93 — SH2-like
Superfamily Superfamily superfamilyd.93.1 — SH2 domain
Family Family familyd.93.1.1 — SH2 domain
Domain ID domain_idd5bo4m2
Class classa — All alpha proteins
Fold Fold folda.271 — SOCS box-like
Superfamily Superfamily superfamilya.271.1 — SOCS box-like
Family Family familya.271.1.1 — SOCS box-like
Domain ID domain_idd5bo4o_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.42 — POZ domain
Superfamily Superfamily superfamilyd.42.1 — POZ domain
Family Family familyd.42.1.1 — BTB/POZ domain
Domain ID domain_idd5bo4p1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.93 — SH2-like
Superfamily Superfamily superfamilyd.93.1 — SH2 domain
Family Family familyd.93.1.1 — SH2 domain
Domain ID domain_idd5bo4p2
Class classa — All alpha proteins
Fold Fold folda.271 — SOCS box-like
Superfamily Superfamily superfamilya.271.1 — SOCS box-like
Family Family familya.271.1.1 — SOCS box-like
Domain ID domain_idd5bo4q_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.1 — Ubiquitin-like
Family Family familyd.15.1.1 — Ubiquitin-related
Domain ID domain_idd5bo4r_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.42 — POZ domain
Superfamily Superfamily superfamilyd.42.1 — POZ domain
Family Family familyd.42.1.1 — BTB/POZ domain

CATH v4.4 (24 domains)

Domain ID domain_id5bo4A01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology505 — SHC Adaptor Protein
Homologous superfamily homologous superfamily10 — SH2 domain
Domain ID domain_id5bo4A02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology750 — Elongin C; Chain C, domain 1
Homologous superfamily homologous superfamily20 — SOCS box
Domain ID domain_id5bo4B00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Domain ID domain_id5bo4C00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology710 — Potassium Channel Kv1.1; Chain A
Homologous superfamily homologous superfamily10 — Potassium Channel Kv1.1; Chain A
Domain ID domain_id5bo4D01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology505 — SHC Adaptor Protein
Homologous superfamily homologous superfamily10 — SH2 domain
Domain ID domain_id5bo4D02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology750 — Elongin C; Chain C, domain 1
Homologous superfamily homologous superfamily20 — SOCS box
Domain ID domain_id5bo4E00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Domain ID domain_id5bo4F00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology710 — Potassium Channel Kv1.1; Chain A
Homologous superfamily homologous superfamily10 — Potassium Channel Kv1.1; Chain A
Domain ID domain_id5bo4G01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology505 — SHC Adaptor Protein
Homologous superfamily homologous superfamily10 — SH2 domain
Domain ID domain_id5bo4G02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology750 — Elongin C; Chain C, domain 1
Homologous superfamily homologous superfamily20 — SOCS box
Domain ID domain_id5bo4H00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Domain ID domain_id5bo4I00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology710 — Potassium Channel Kv1.1; Chain A
Homologous superfamily homologous superfamily10 — Potassium Channel Kv1.1; Chain A
Domain ID domain_id5bo4J01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology505 — SHC Adaptor Protein
Homologous superfamily homologous superfamily10 — SH2 domain
Domain ID domain_id5bo4J02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology750 — Elongin C; Chain C, domain 1
Homologous superfamily homologous superfamily20 — SOCS box
Domain ID domain_id5bo4K00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Domain ID domain_id5bo4L00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology710 — Potassium Channel Kv1.1; Chain A
Homologous superfamily homologous superfamily10 — Potassium Channel Kv1.1; Chain A
Domain ID domain_id5bo4M01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology505 — SHC Adaptor Protein
Homologous superfamily homologous superfamily10 — SH2 domain
Domain ID domain_id5bo4M02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology750 — Elongin C; Chain C, domain 1
Homologous superfamily homologous superfamily20 — SOCS box
Domain ID domain_id5bo4N00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Domain ID domain_id5bo4O00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology710 — Potassium Channel Kv1.1; Chain A
Homologous superfamily homologous superfamily10 — Potassium Channel Kv1.1; Chain A
Domain ID domain_id5bo4P01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology505 — SHC Adaptor Protein
Homologous superfamily homologous superfamily10 — SH2 domain
Domain ID domain_id5bo4P02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology750 — Elongin C; Chain C, domain 1
Homologous superfamily homologous superfamily20 — SOCS box
Domain ID domain_id5bo4Q00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Domain ID domain_id5bo4R00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology710 — Potassium Channel Kv1.1; Chain A
Homologous superfamily homologous superfamily10 — Potassium Channel Kv1.1; Chain A
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7. Citations (1)