5brm

Structural basis for Mob1-dependent activation of the core Mst-Lats kinase cascade in Hippo signaling

Method: X-RAY DIFFRACTION Dmax: 106.3 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

MOB kinase activator 1A

Homo sapiens

UniProt Q9H8S9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 15 PDB declaration: pentadecameric(15) Consistent with protein copy count Chain A; UniProt 41–216 Chain B; UniProt 41–216 Chain C; UniProt 41–216 Chain D; UniProt 41–216 Chain E; UniProt 41–216 Chain F; UniProt 41–216 Fragment:UNP residues 41-216 Serine/threonine-protein kinase 3 × 9 (Q13188) ZN ZINC ION × 6 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;2.4 M Na Malonate Resolution 2.65 Å R-free 0.268

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

10 other PDB entries and 17 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MOB1A_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–177; UniProt 41–216 Author chain B; PDBConstruct 2–177; UniProt 41–216 Author chain C; PDBConstruct 2–177; UniProt 41–216 Author chain D; PDBConstruct 2–177; UniProt 41–216 Author chain E; PDBConstruct 2–177; UniProt 41–216 Author chain F; PDBConstruct 2–177; UniProt 41–216

Serine/threonine-protein kinase 3

OrganismNot specified

UniProt Q13188

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 15 PDB declaration: pentadecameric(15) Consistent with protein copy count Chain G; UniProt 371–401 Chain H; UniProt 371–401 Chain I; UniProt 371–401 Chain J; UniProt 371–401 Chain K; UniProt 371–401 Chain L; UniProt 371–401 Chain M; UniProt 371–401 Chain N; UniProt 371–401 Chain O; UniProt 371–401 Fragment:UNP residues 371-401 Non-standard monomer:Yes (specific site not provided by mmCIF) MOB kinase activator 1A × 6 (Q9H8S9) ZN ZINC ION × 6 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;2.4 M Na Malonate Resolution 2.65 Å R-free 0.268

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 27 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name STK3_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain G; PDBConstruct 1–31; UniProt 371–401 Author chain H; PDBConstruct 1–31; UniProt 371–401 Author chain I; PDBConstruct 1–31; UniProt 371–401 Author chain J; PDBConstruct 1–31; UniProt 371–401 Author chain K; PDBConstruct 1–31; UniProt 371–401 Author chain L; PDBConstruct 1–31; UniProt 371–401 Author chain M; PDBConstruct 1–31; UniProt 371–401 Author chain N; PDBConstruct 1–31; UniProt 371–401 Author chain O; PDBConstruct 1–31; UniProt 371–401

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5brm

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5brm
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5brm
Deposition date deposition_date2015-05-31
Structure title titleStructural basis for Mob1-dependent activation of the core Mst-Lats kinase cascade in Hippo signaling
Keywords keywordsMst2, Mob1, Hippo, Transferase-Signaling Protein complex; Transferase/Signaling Protein
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier35.09
Radius of gyration Rg (electron density) rg_electron33.98
Forward intensity I(0) i0236805000.00
Molecular weight molecular_weight126650.0 kDa
Excluded volume excluded_volume159190 ų
Envelope volume envelope_volume207670 ų
Hydration-shell volume shell_volume49200 ų
Envelope diameter envelope_diameter112.8
Shell Rg shell_rg42.46
Envelope Rg envelope_rg33.23
Shape Rg shape_rg33.93
Total Rg total_rg34.78
Total atoms total_atoms17458
Residues n_residues1054
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax106.3
Rg (real space) rg_real34.90
Rg uncertainty (real space) rg_real_error0.63
I(0) (real space) i0_real2.3680e+08
I(0) uncertainty (real space) i0_real_error3.3230e+06
Rg (reciprocal space) rg_reciprocal35.02
I(0) (reciprocal space) i0_reciprocal236800000.0000
Solution quality estimate total_estimate0.9101
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary49.6
Skewness Skewness skewness0.040
Kurtosis Kurtosis kurtosis-0.685
Angular range angular_range— – 0.2250 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha103800000.0000
Real-space data points n_real_points46
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.960; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.952

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 6 domains

CATH v4.4 (6 domains)

Domain ID domain_id5brmA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology140 — Butyryl-CoA Dehydrogenase, subunit A; domain 3
Homologous superfamily homologous superfamily30 — MOB kinase activator
Domain ID domain_id5brmB00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology140 — Butyryl-CoA Dehydrogenase, subunit A; domain 3
Homologous superfamily homologous superfamily30 — MOB kinase activator
Domain ID domain_id5brmC00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology140 — Butyryl-CoA Dehydrogenase, subunit A; domain 3
Homologous superfamily homologous superfamily30 — MOB kinase activator
Domain ID domain_id5brmD00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology140 — Butyryl-CoA Dehydrogenase, subunit A; domain 3
Homologous superfamily homologous superfamily30 — MOB kinase activator
Domain ID domain_id5brmE00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology140 — Butyryl-CoA Dehydrogenase, subunit A; domain 3
Homologous superfamily homologous superfamily30 — MOB kinase activator
Domain ID domain_id5brmF00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology140 — Butyryl-CoA Dehydrogenase, subunit A; domain 3
Homologous superfamily homologous superfamily30 — MOB kinase activator

8. Citations (1)

9. Files and Curves (10)