5hly

Structure of Pro-Activin A Precursor at 2.3 A Resolution

Method: X-RAY DIFFRACTION Dmax: 92.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Inhibin beta A chain

Homo sapiens

UniProt P08476

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 30–426 Mutation:C35S, C38S, deletion:K259-D282 Non-standard monomer:Yes (specific site not provided by mmCIF) CL CHLORIDE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6.5;292 K;25% w/v polyethylene glycol 1000, 100 mM MES pH 6.5; cryo: 15% v/v PEG 400 added Resolution 2.30 Å R-free 0.252

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

14 other PDB entries and 19 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name INHBA_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 11–383; UniProt 30–426

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5hly

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5hly
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5hly
Deposition date deposition_date2016-01-15
Structure title titleStructure of Pro-Activin A Precursor at 2.3 A Resolution
Keywords keywordsGrowth factor, Precursor, Signalling, Signaling Protein; SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier29.58
Radius of gyration Rg (electron density) rg_electron29.30
Forward intensity I(0) i021207900.00
Molecular weight molecular_weight34322.0 kDa
Excluded volume excluded_volume42435 ų
Envelope volume envelope_volume60956 ų
Hydration-shell volume shell_volume18154 ų
Envelope diameter envelope_diameter92.4
Shell Rg shell_rg34.83
Envelope Rg envelope_rg28.93
Shape Rg shape_rg29.34
Total Rg total_rg29.78
Total atoms total_atoms2373
Residues n_residues291
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax92.4
Rg (real space) rg_real29.74
Rg uncertainty (real space) rg_real_error0.74
I(0) (real space) i0_real2.1210e+07
I(0) uncertainty (real space) i0_real_error3.0690e+05
Rg (reciprocal space) rg_reciprocal29.68
I(0) (reciprocal space) i0_reciprocal21210000.0000
Solution quality estimate total_estimate0.8498
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary22.2
Skewness Skewness skewness0.271
Kurtosis Kurtosis kurtosis-0.933
Angular range angular_range— – 0.2700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1545000.0000
Real-space data points n_real_points55
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.829; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.662; Smooth: 0.894

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)