2b0u

The Structure of the Follistatin:Activin Complex

Method: X-RAY DIFFRACTION Dmax: 102.8 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Inhibin beta A chain

Homo sapiens

UniProt P08476

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 311–426 Chain B; UniProt 311–426 Fragment:Activin (mature form) Follistatin × 2 (P19883) IR3 IRIDIUM (III) ION × 5 MLI MALONATE ION × 4 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;295 K;PEG 3350, 200 mM Malonate, pH 7.0, vapor diffusion, hanging drop, temperature 295K Resolution 2.80 Å R-free 0.297

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

14 other PDB entries and 19 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name INHBA_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–116; UniProt 311–426 Author chain B; PDBConstruct 1–116; UniProt 311–426

Follistatin

Homo sapiens

UniProt P19883

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain C; UniProt 30–317 Chain D; UniProt 30–317 Fragment:Follistatin-288 Inhibin beta A chain × 2 (P08476) IR3 IRIDIUM (III) ION × 5 MLI MALONATE ION × 4 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;295 K;PEG 3350, 200 mM Malonate, pH 7.0, vapor diffusion, hanging drop, temperature 295K Resolution 2.80 Å R-free 0.297

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name FST_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–288; UniProt 30–317 Author chain D; PDBConstruct 1–288; UniProt 30–317

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2b0u

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2b0u
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2b0u
Deposition date deposition_date2005-09-14
Structure title titleThe Structure of the Follistatin:Activin Complex
Keywords keywordsactivin, follistatin, TGF-beta, morphogen, inhibin, SIGNALING PROTEIN; SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier32.33
Radius of gyration Rg (electron density) rg_electron31.62
Forward intensity I(0) i0144786000.00
Molecular weight molecular_weight86239.0 kDa
Excluded volume excluded_volume103620 ų
Envelope volume envelope_volume150470 ų
Hydration-shell volume shell_volume39767 ų
Envelope diameter envelope_diameter112.6
Shell Rg shell_rg38.94
Envelope Rg envelope_rg30.75
Shape Rg shape_rg31.61
Total Rg total_rg32.26
Total atoms total_atoms5904
Residues n_residues799
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax102.8
Rg (real space) rg_real32.25
Rg uncertainty (real space) rg_real_error0.64
I(0) (real space) i0_real1.4480e+08
I(0) uncertainty (real space) i0_real_error2.1980e+06
Rg (reciprocal space) rg_reciprocal32.28
I(0) (reciprocal space) i0_reciprocal144800000.0000
Solution quality estimate total_estimate0.9039
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary37.8
Skewness Skewness skewness0.239
Kurtosis Kurtosis kurtosis-0.456
Angular range angular_range— – 0.2450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha12410000.0000
Real-space data points n_real_points50
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.944; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.916

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

7. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2b0ua_
Class classg — Small proteins
Fold Fold foldg.17 — Cystine-knot cytokines
Superfamily Superfamily superfamilyg.17.1 — Cystine-knot cytokines
Family Family familyg.17.1.2 — Transforming growth factor (TGF)-beta
Domain ID domain_idd2b0ub_
Class classg — Small proteins
Fold Fold foldg.17 — Cystine-knot cytokines
Superfamily Superfamily superfamilyg.17.1 — Cystine-knot cytokines
Family Family familyg.17.1.2 — Transforming growth factor (TGF)-beta

CATH v4.4 (10 domains)

Domain ID domain_id2b0uA00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id2b0uB00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id2b0uC01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology290 — Extracellular Matrix Fibrillin
Homologous superfamily homologous superfamily10 — TGF-beta binding (TB) domain
Domain ID domain_id2b0uC02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30
Domain ID domain_id2b0uC03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30
Domain ID domain_id2b0uC04
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30
Domain ID domain_id2b0uD01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology290 — Extracellular Matrix Fibrillin
Homologous superfamily homologous superfamily10 — TGF-beta binding (TB) domain
Domain ID domain_id2b0uD02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30
Domain ID domain_id2b0uD03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30
Domain ID domain_id2b0uD04
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30

8. Citations (1)

9. Files and Curves (10)