5m3y

Crystal structure of human glycosylated angiotensinogen

Method: X-RAY DIFFRACTION Dmax: 74.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Angiotensinogen

Homo sapiens

UniProt P01019

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Other combination Monomer Protein × 1 其他Polymer 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 34–485 Mutation:N137Q, N271Q, N295Q, C232S, C308S beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293.15 K;2.0M Ammonium Sulfate, 0.1M Bicine, pH9.0 Resolution 2.30 Å R-free 0.189

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 17 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ANGT_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–452; UniProt 34–485

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5m3y

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5m3y
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5m3y
Deposition date deposition_date2016-10-17
Structure title titleCrystal structure of human glycosylated angiotensinogen
Keywords keywordsglycosylated, human angiotensiogen, Serine protease inhibitor; Serine protease inhibitor
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.41
Radius of gyration Rg (electron density) rg_electron21.97
Forward intensity I(0) i034091400.00
Molecular weight molecular_weight46709.0 kDa
Excluded volume excluded_volume59217 ų
Envelope volume envelope_volume69960 ų
Hydration-shell volume shell_volume26165 ų
Envelope diameter envelope_diameter78.3
Shell Rg shell_rg29.36
Envelope Rg envelope_rg22.33
Shape Rg shape_rg21.94
Total Rg total_rg22.96
Total atoms total_atoms6595
Residues n_residues418
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax74.8
Rg (real space) rg_real23.31
Rg uncertainty (real space) rg_real_error0.42
I(0) (real space) i0_real3.4090e+07
I(0) uncertainty (real space) i0_real_error4.5910e+05
Rg (reciprocal space) rg_reciprocal23.33
I(0) (reciprocal space) i0_reciprocal34090000.0000
Solution quality estimate total_estimate0.8944
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary28.8
Skewness Skewness skewness0.237
Kurtosis Kurtosis kurtosis-0.398
Angular range angular_range— – 0.3400 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8578000.0000
Real-space data points n_real_points66
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.884; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.973

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)