5mpp

Structure of AaLS-wt

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

6,7-dimethyl-8-ribityllumazine synthase

Aquifex aeolicus

UniProt O66529

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 60 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RISB_AQUAE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 0; PDBConstruct 1–154; UniProt 1–154 Author chain 1; PDBConstruct 1–154; UniProt 1–154 Author chain 2; PDBConstruct 1–154; UniProt 1–154 Author chain 3; PDBConstruct 1–154; UniProt 1–154 Author chain 4; PDBConstruct 1–154; UniProt 1–154 Author chain 5; PDBConstruct 1–154; UniProt 1–154 Author chain 6; PDBConstruct 1–154; UniProt 1–154 Author chain 7; PDBConstruct 1–154; UniProt 1–154 Author chain 8; PDBConstruct 1–154; UniProt 1–154 Author chain 9; PDBConstruct 1–154; UniProt 1–154 Author chain A; PDBConstruct 1–154; UniProt 1–154 Author chain B; PDBConstruct 1–154; UniProt 1–154 Author chain C; PDBConstruct 1–154; UniProt 1–154 Author chain D; PDBConstruct 1–154; UniProt 1–154 Author chain E; PDBConstruct 1–154; UniProt 1–154 Author chain F; PDBConstruct 1–154; UniProt 1–154 Author chain G; PDBConstruct 1–154; UniProt 1–154 Author chain H; PDBConstruct 1–154; UniProt 1–154 Author chain I; PDBConstruct 1–154; UniProt 1–154 Author chain J; PDBConstruct 1–154; UniProt 1–154 Author chain K; PDBConstruct 1–154; UniProt 1–154 Author chain L; PDBConstruct 1–154; UniProt 1–154 Author chain M; PDBConstruct 1–154; UniProt 1–154 Author chain N; PDBConstruct 1–154; UniProt 1–154 Author chain O; PDBConstruct 1–154; UniProt 1–154 Author chain P; PDBConstruct 1–154; UniProt 1–154 Author chain Q; PDBConstruct 1–154; UniProt 1–154 Author chain R; PDBConstruct 1–154; UniProt 1–154 Author chain S; PDBConstruct 1–154; UniProt 1–154 Author chain T; PDBConstruct 1–154; UniProt 1–154 Author chain U; PDBConstruct 1–154; UniProt 1–154 Author chain V; PDBConstruct 1–154; UniProt 1–154 Author chain W; PDBConstruct 1–154; UniProt 1–154 Author chain X; PDBConstruct 1–154; UniProt 1–154 Author chain Y; PDBConstruct 1–154; UniProt 1–154 Author chain Z; PDBConstruct 1–154; UniProt 1–154 Author chain a; PDBConstruct 1–154; UniProt 1–154 Author chain b; PDBConstruct 1–154; UniProt 1–154 Author chain c; PDBConstruct 1–154; UniProt 1–154 Author chain d; PDBConstruct 1–154; UniProt 1–154 Author chain e; PDBConstruct 1–154; UniProt 1–154 Author chain f; PDBConstruct 1–154; UniProt 1–154 Author chain g; PDBConstruct 1–154; UniProt 1–154 Author chain h; PDBConstruct 1–154; UniProt 1–154 Author chain i; PDBConstruct 1–154; UniProt 1–154 Author chain j; PDBConstruct 1–154; UniProt 1–154 Author chain k; PDBConstruct 1–154; UniProt 1–154 Author chain l; PDBConstruct 1–154; UniProt 1–154 Author chain m; PDBConstruct 1–154; UniProt 1–154 Author chain n; PDBConstruct 1–154; UniProt 1–154 Author chain o; PDBConstruct 1–154; UniProt 1–154 Author chain p; PDBConstruct 1–154; UniProt 1–154 Author chain q; PDBConstruct 1–154; UniProt 1–154 Author chain r; PDBConstruct 1–154; UniProt 1–154 Author chain s; PDBConstruct 1–154; UniProt 1–154 Author chain t; PDBConstruct 1–154; UniProt 1–154 Author chain u; PDBConstruct 1–154; UniProt 1–154 Author chain v; PDBConstruct 1–154; UniProt 1–154 Author chain w; PDBConstruct 1–154; UniProt 1–154 Author chain x; PDBConstruct 1–154; UniProt 1–154

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5mpp
Deposition date deposition_date2016-12-17
Structure title titleStructure of AaLS-wt
Keywords keywordscryo-EM, protein cage, dodecahedron, lumazine synthase, Transferase; TRANSFERASE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5mpp__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5mpp__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5mpp__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)65.58 Å
Rg (electron density)64.19 Å
Total Rg64.52 Å
Atom count70560
Residues9240
Excluded volume1261600 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5mpp__assembly_1__model_1 60-meric (60) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 60 domains

CATH v4.4 (60 domains)

Domain ID domain_id5mpp000
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp100
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp200
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp300
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp400
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp500
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp600
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp700
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp800
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpp900
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppA00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppB00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppC00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppD00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppE00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppF00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppG00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppH00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppI00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppJ00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppK00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppL00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppM00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppN00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppO00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppP00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppQ00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppR00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppS00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppT00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppU00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppV00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppW00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppX00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppY00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppZ00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppa00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppb00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppc00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppd00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppe00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppf00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppg00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpph00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppi00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppj00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppk00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppl00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppm00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppn00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppo00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppp00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppq00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppr00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mpps00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppt00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppu00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppv00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppw00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
Domain ID domain_id5mppx00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily960 — Lumazine/riboflavin synthase
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7. Citations (1)