9rym
Aquifex aeolicus lumazine synthase 10-pentamer cage in complex with riboflavin synthase trimer
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9rym |
| deposition_date | 2025-07-15 |
| title | Aquifex aeolicus lumazine synthase 10-pentamer cage in complex with riboflavin synthase trimer |
| keywords | protein cage, protein engineering, self-assembly, geometry, pentamer, encapsulation, BIOSYNTHETIC PROTEIN; BIOSYNTHETIC PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 63.77 Å |
| rg_electron | 62.57 Å |
| i0 | 10892000000.00 |
| molecular_weight | 903850.0 kDa |
| excluded_volume | 1140500 ų |
| envelope_volume | 1680100 ų |
| shell_volume | 207780 ų |
| envelope_diameter | 170.9 Å |
| shell_rg | 75.90 Å |
| envelope_rg | 59.81 Å |
| shape_rg | 62.54 Å |
| total_rg | 62.89 Å |
| total_atoms | 63714 |
| n_residues | 8321 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 239.9 Å |
| rg_real | 66.41 Å |
| rg_real_error | 1.28 Å |
| i0_real | 1.0900e+10 |
| i0_real_error | 2.2360e+08 |
| rg_reciprocal | 64.34 Å |
| i0_reciprocal | 10920000000.0000 |
| total_estimate | 0.8549 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 86.4 Å |
| skewness | 0.515 |
| kurtosis | 0.947 |
| angular_range | — – 0.1250 Å−1 |
| current_alpha | 0.9244 |
| highest_alpha | 1929000000.0000 |
| n_real_points | 26 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.507; Stabil: 0.894; Sysdev: 1.000; Positv: 1.000; Valcen: 0.962; Smooth: 0.955 |