|
7PFO
Core human replisome
Deposited 2021-08-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 19
PDB declaration: 21-meric
|
Chain B
1–2286(2286 aa)
|
Not recorded
|
ZN ZINC ION × 5
MG MAGNESIUM ION × 3
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3
SO4 SULFATE ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
7PLO
H. sapiens replisome-CUL2/LRR1 complex
Deposited 2021-09-01
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Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 24
PDB declaration: 26-meric
|
Chain B
1–2286(2286 aa)
|
Not recorded
|
ZN ZINC ION × 8
MG MAGNESIUM ION × 3
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3
SO4 SULFATE ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
9B8S
Human polymerase epsilon bound to PCNA and DNA in the nucleotide exchange state
Deposited 2024-03-31
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–2286(2286 aa)
|
Mutation:D275A, E277A
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SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.01 Å
|
|
9F6D
Human DNA polymerase epsilon bound to DNA and PCNA (open conformation)
Deposited 2024-05-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–1200(1200 aa)
|
Mutation:D275A E277A
|
SF4 IRON/SULFUR CLUSTER × 1
DDS 2',3'-dideoxyadenosine triphosphate × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
9F6E
Human DNA polymerase epsilon bound to DNA and PCNA (ajar conformation)
Deposited 2024-05-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–1200(1200 aa)
|
Mutation:D275A E277A
|
SF4 IRON/SULFUR CLUSTER × 1
DDS 2',3'-dideoxyadenosine triphosphate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.74 Å
|
|
9F6F
Human DNA polymerase epsilon bound to DNA and PCNA (closed conformation)
Deposited 2024-05-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–1200(1200 aa)
|
Mutation:D275A E277A
|
SF4 IRON/SULFUR CLUSTER × 1
DDS 2',3'-dideoxyadenosine triphosphate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.75 Å
|
|
9F6I
Human DNA Polymerase epsilon bound to T-C mismatched DNA (Post-Insertion state)
Deposited 2024-05-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Monomer;Protein × 1
PDB declaration: trimeric
|
Chain A
1–1200(1200 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
DDS 2',3'-dideoxyadenosine triphosphate × 1
CA CALCIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
9F6J
Human DNA Polymerase epsilon bound to T-C mismatched DNA (Polymerase Arrest state)
Deposited 2024-05-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Monomer;Protein × 1
PDB declaration: trimeric
|
Chain A
1–1200(1200 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å
|
|
9F6K
Human DNA Polymerase epsilon bound to T-C mismatched DNA (Frayed Substrate state)
Deposited 2024-05-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Monomer;Protein × 1
PDB declaration: trimeric
|
Chain A
1–1200(1200 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.20 Å
|
|
9F6L
Human DNA Polymerase epsilon bound to T-C mismatched DNA (Mismatch Excision state)
Deposited 2024-05-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Monomer;Protein × 1
PDB declaration: trimeric
|
Chain A
1–1200(1200 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
CA CALCIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å
|
|
9NE6
Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the mismatch-editing state
Deposited 2025-02-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–1200(1200 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.11 Å
|
|
9NE7
Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the Pol-backtracking state
Deposited 2025-02-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–1200(1200 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.53 Å
|
|
9NE8
Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the mismatch-locking state
Deposited 2025-02-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–1200(1200 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
9NE9
Human polymerase epsilon bound to PCNA and DNA with a pre-existing mismatch in the blocked conformation I
Deposited 2025-02-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
27–1198(1172 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.88 Å
|
|
9NEA
Human polymerase epsilon bound to PCNA and DNA with a pre-existing mismatch in the blocked conformation II
Deposited 2025-02-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–2286(2286 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.81 Å
|
|
9SRI
Human DNA polymerase epsilon bound to DNA blunt end
Deposited 2025-09-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
1–1200(1200 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|