5yfp

Cryo-EM Structure of the Exocyst Complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Exocyst complex component SEC3

OrganismNot specified

UniProt P33332

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Exocyst complex component SEC5 × 1 (P89102) Exocyst complex component SEC6 × 1 (P32844) Exocyst complex component SEC8 × 1 (P32855) Exocyst complex component SEC10 × 1 (Q06245) Exocyst complex component SEC15 × 1 (P22224) Exocyst complex component EXO70 × 1 (P19658) Exocyst complex component EXO84 × 1 (P38261) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEC3_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–1336; UniProt 1–1336

Exocyst complex component SEC5

OrganismNot specified

UniProt P89102

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Exocyst complex component SEC3 × 1 (P33332) Exocyst complex component SEC6 × 1 (P32844) Exocyst complex component SEC8 × 1 (P32855) Exocyst complex component SEC10 × 1 (Q06245) Exocyst complex component SEC15 × 1 (P22224) Exocyst complex component EXO70 × 1 (P19658) Exocyst complex component EXO84 × 1 (P38261) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEC5_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–971; UniProt 1–971

Exocyst complex component SEC6

OrganismNot specified

UniProt P32844

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Exocyst complex component SEC3 × 1 (P33332) Exocyst complex component SEC5 × 1 (P89102) Exocyst complex component SEC8 × 1 (P32855) Exocyst complex component SEC10 × 1 (Q06245) Exocyst complex component SEC15 × 1 (P22224) Exocyst complex component EXO70 × 1 (P19658) Exocyst complex component EXO84 × 1 (P38261) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEC6_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–805; UniProt 1–805

Exocyst complex component SEC8

OrganismNot specified

UniProt P32855

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Exocyst complex component SEC3 × 1 (P33332) Exocyst complex component SEC5 × 1 (P89102) Exocyst complex component SEC6 × 1 (P32844) Exocyst complex component SEC10 × 1 (Q06245) Exocyst complex component SEC15 × 1 (P22224) Exocyst complex component EXO70 × 1 (P19658) Exocyst complex component EXO84 × 1 (P38261) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEC8_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–1065; UniProt 1–1065

Exocyst complex component SEC10

OrganismNot specified

UniProt Q06245

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Exocyst complex component SEC3 × 1 (P33332) Exocyst complex component SEC5 × 1 (P89102) Exocyst complex component SEC6 × 1 (P32844) Exocyst complex component SEC8 × 1 (P32855) Exocyst complex component SEC15 × 1 (P22224) Exocyst complex component EXO70 × 1 (P19658) Exocyst complex component EXO84 × 1 (P38261) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEC10_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–871; UniProt 1–871

Exocyst complex component SEC15

OrganismNot specified

UniProt P22224

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Exocyst complex component SEC3 × 1 (P33332) Exocyst complex component SEC5 × 1 (P89102) Exocyst complex component SEC6 × 1 (P32844) Exocyst complex component SEC8 × 1 (P32855) Exocyst complex component SEC10 × 1 (Q06245) Exocyst complex component EXO70 × 1 (P19658) Exocyst complex component EXO84 × 1 (P38261) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEC15_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–910; UniProt 1–910

Exocyst complex component EXO70

OrganismNot specified

UniProt P19658

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Exocyst complex component SEC3 × 1 (P33332) Exocyst complex component SEC5 × 1 (P89102) Exocyst complex component SEC6 × 1 (P32844) Exocyst complex component SEC8 × 1 (P32855) Exocyst complex component SEC10 × 1 (Q06245) Exocyst complex component SEC15 × 1 (P22224) Exocyst complex component EXO84 × 1 (P38261) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EXO70_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–623; UniProt 1–623

Exocyst complex component EXO84

OrganismNot specified

UniProt P38261

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Exocyst complex component SEC3 × 1 (P33332) Exocyst complex component SEC5 × 1 (P89102) Exocyst complex component SEC6 × 1 (P32844) Exocyst complex component SEC8 × 1 (P32855) Exocyst complex component SEC10 × 1 (Q06245) Exocyst complex component SEC15 × 1 (P22224) Exocyst complex component EXO70 × 1 (P19658) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EXO84_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–753; UniProt 1–753

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5yfp
Deposition date deposition_date2017-09-21
Structure title titleCryo-EM Structure of the Exocyst Complex
Keywords keywordsexocyst, coiled-coil, EXOCYTOSIS; EXOCYTOSIS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5yfp__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5yfp__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5yfp__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)82.40 Å
Rg (electron density)83.62 Å
Total Rg83.40 Å
Atom count33095
Residues5981
Excluded volume548810 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5yfp__assembly_1__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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7. Citations (1)