6cxj

Cardiac thin filament decorated with C0C1 fragment of cardiac myosin binding protein C mode 2

Method: ELECTRON MICROSCOPY Dmax: 190.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Actin, cytoplasmic 2

Homo sapiens

UniProt P63261

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 20 PDB declaration: eicosameric(20) Consistent with protein copy count Chain A; UniProt 1–375 Chain B; UniProt 1–375 Chain C; UniProt 1–375 Chain D; UniProt 1–375 Chain E; UniProt 1–375 Not recorded Myosin-binding protein C, cardiac-type × 6 (Q14896) Myosin-binding protein C, cardiac-type × 5 (Q14896) Tropomyosin × 4 ELECTRON MICROSCOPY cryo-EM buffer:pH 7 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 11.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

8 other PDB entries and 12 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACTG_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–375; UniProt 1–375 Author chain B; PDBConstruct 1–375; UniProt 1–375 Author chain C; PDBConstruct 1–375; UniProt 1–375 Author chain D; PDBConstruct 1–375; UniProt 1–375 Author chain E; PDBConstruct 1–375; UniProt 1–375

Myosin-binding protein C, cardiac-type

Homo sapiens

UniProt Q14896

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 20 PDB declaration: eicosameric(20) Consistent with protein copy count Chain G; UniProt 151–258 Chain H; UniProt 151–258 Chain I; UniProt 151–258 Chain J; UniProt 151–258 Chain K; UniProt 151–258 Chain L; UniProt 151–258 Chain M; UniProt 1–101 Chain N; UniProt 1–101 Chain O; UniProt 1–101 Chain P; UniProt 1–101 Chain Q; UniProt 1–101 Fragment:C1 Ig-domain (UNP residues 151-258) Fragment:C0 Ig-domain (UNP residues 1-101) Actin, cytoplasmic 2 × 5 (P63261) Tropomyosin × 4 ELECTRON MICROSCOPY cryo-EM buffer:pH 7 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 11.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MYPC3_HUMAN
Isoform Q14896-2
PDB entities 2, 3
Chains and sequence ranges Author chain G; PDBConstruct 2–109; UniProt 151–258 Author chain H; PDBConstruct 2–109; UniProt 151–258 Author chain I; PDBConstruct 2–109; UniProt 151–258 Author chain J; PDBConstruct 2–109; UniProt 151–258 Author chain K; PDBConstruct 2–109; UniProt 151–258 Author chain L; PDBConstruct 2–109; UniProt 151–258 Author chain M; PDBConstruct 1–101; UniProt 1–101 Author chain N; PDBConstruct 1–101; UniProt 1–101 Author chain O; PDBConstruct 1–101; UniProt 1–101 Author chain P; PDBConstruct 1–101; UniProt 1–101 Author chain Q; PDBConstruct 1–101; UniProt 1–101

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6cxj

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6cxj
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6cxj
Deposition date deposition_date2018-04-03
Structure title titleCardiac thin filament decorated with C0C1 fragment of cardiac myosin binding protein C mode 2
Keywords keywordsmyosin binding protein C, MOTOR PROTEIN; MOTOR PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier56.11
Radius of gyration Rg (electron density) rg_electron55.93
Forward intensity I(0) i01920560000.00
Molecular weight molecular_weight359400.0 kDa
Excluded volume excluded_volume446780 ų
Envelope volume envelope_volume756000 ų
Hydration-shell volume shell_volume112180 ų
Envelope diameter envelope_diameter206.3
Shell Rg shell_rg58.54
Envelope Rg envelope_rg55.66
Shape Rg shape_rg55.97
Total Rg total_rg55.88
Total atoms total_atoms25305
Residues n_residues3429
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax190.2
Rg (real space) rg_real56.20
Rg uncertainty (real space) rg_real_error1.49
I(0) (real space) i0_real1.9210e+09
I(0) uncertainty (real space) i0_real_error3.7890e+07
Rg (reciprocal space) rg_reciprocal56.02
I(0) (reciprocal space) i0_reciprocal1920000000.0000
Solution quality estimate total_estimate0.8447
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary61.1
Skewness Skewness skewness0.454
Kurtosis Kurtosis kurtosis-0.157
Angular range angular_range— – 0.1400 −1
Current regularization parameter α current_alpha0.0001
Highest regularization parameter α highest_alpha279600000.0000
Real-space data points n_real_points29
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.785; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.627

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)