6f6o

Structure of Adenovirus 3 fiber head V239D mutant

Method: X-RAY DIFFRACTION

1. Protein Identity and Related Structures Protein Identity & Related Structures

Fiber protein

Human adenovirus B serotype 3

UniProt P04501

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 3 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPIKE_ADE03
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–196; UniProt 124–319

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

2. Structure Basics 2. Structure Basics

Entry ID entry_id6f6o
Deposition date deposition_date2017-12-05
Structure title titleStructure of Adenovirus 3 fiber head V239D mutant
Keywords keywordsadenovirus 3 fiber head, capsid protein, cell adhesion, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6f6o__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6f6o__assembly_1__model_1 | I(q)

10-2 10-1 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6f6o__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)25.04 Å
Rg (electron density)23.51 Å
Total Rg24.53 Å
Atom count4473
Residues570
Excluded volume79801 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6f6o__assembly_1__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (2)

6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd6f6oa_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain

CATH v4.4 (1 domains)

Domain ID domain_id6f6oA00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain

7. Citations (1)