6sit

Pseudo-atomic crystal structure of the desmoglein 2 - human adenovirus serotype 3 fibre knob complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Fiber protein

Human adenovirus B3

UniProt P04501

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Desmoglein-2 × 3 (Q14126) CALCIUM ION × 18 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPIKE_ADE03
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–191; UniProt 129–319

Desmoglein-2

Homo sapiens

UniProt Q14126

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Fiber protein × 3 (P04501) CALCIUM ION × 18 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DSG2_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–238; UniProt 149–386

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6sit
Deposition date deposition_date2019-08-11
Structure title titlePseudo-atomic crystal structure of the desmoglein 2 - human adenovirus serotype 3 fibre knob complex
Keywords keywordsvirus receptor, extracellular domain, cell surface glycoprotein, desmosome, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6sit__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6sit__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6sit__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)36.43 Å
Rg (electron density)35.43 Å
Total Rg36.06 Å
Atom count10134
Residues1287
Excluded volume181140 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6sit__assembly_1__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)