6sit

Pseudo-atomic crystal structure of the desmoglein 2 - human adenovirus serotype 3 fibre knob complex

Method: X-RAY DIFFRACTION

1. Protein Identity and Related Structures Protein Identity & Related Structures

Fiber protein

Human adenovirus B3

UniProt P04501

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Desmoglein-2 × 3 (Q14126) CALCIUM ION × 18 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPIKE_ADE03
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–191; UniProt 129–319

Desmoglein-2

Homo sapiens

UniProt Q14126

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Fiber protein × 3 (P04501) CALCIUM ION × 18 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DSG2_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–238; UniProt 149–386

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

2. Structure Basics 2. Structure Basics

Entry ID entry_id6sit
Deposition date deposition_date2019-08-11
Structure title titlePseudo-atomic crystal structure of the desmoglein 2 - human adenovirus serotype 3 fibre knob complex
Keywords keywordsvirus receptor, extracellular domain, cell surface glycoprotein, desmosome, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6sit__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6sit__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6sit__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)36.43 Å
Rg (electron density)35.43 Å
Total Rg36.06 Å
Atom count10134
Residues1287
Excluded volume181140 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6sit__assembly_1__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (3)

7. Citations (1)