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6ihb

Adeno-Associated Virus 2 in complex with AAVR

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Dyslexia-associated protein KIAA0319-like protein

Homo sapiens

UniProt Q8IZA0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 120 Capsid protein VP1 × 60 （P03135） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 2 Capsid protein VP1 × 1 （P03135） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 10 Capsid protein VP1 × 5 （P03135） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 12 Capsid protein VP1 × 6 （P03135） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 2 Capsid protein VP1 × 1 （P03135） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
6ihb 6ihb 6ihb 6ihb 6ihb 6jcq 6jcq 6jcq 6jcq 6jcq 6jcs 6jcs

40 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name K319L_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain R； PDBConstruct 1–94； UniProt 404–497

Capsid protein VP1

OrganismNot specified

UniProt P03135

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 120 Dyslexia-associated protein KIAA0319-like protein × 60 （Q8IZA0） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 2 Dyslexia-associated protein KIAA0319-like protein × 1 （Q8IZA0） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 10 Dyslexia-associated protein KIAA0319-like protein × 5 （Q8IZA0） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 12 Dyslexia-associated protein KIAA0319-like protein × 6 （Q8IZA0） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 2 Dyslexia-associated protein KIAA0319-like protein × 1 （Q8IZA0） Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1lp3 1lp3 6ih9 6ih9

4 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
1lp3 1lp3 1lp3 1lp3 5ipi 5ipk 6cbe 6e9d 6ih9 6ih9 6ih9 6u0r

20 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
3j1s 3j1s 3j1s 3j1s 3j1s 6ihb 6ihb 6ihb 6ihb 6ihb 6nz0 6nz0

15 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name CAPSD_AAV2S
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A； PDBConstruct 1–735； UniProt 1–735

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6ihb
Deposition date deposition_date2018-09-29
Structure title titleAdeno-Associated Virus 2 in complex with AAVR
Keywords keywordsAAV2, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6ihb__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6ihb__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6ihb__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)114.70 Å
Total Rg115.00 Å
Atom count292080
Residues36660
Excluded volume5115100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6ihb__assembly_1__model_1 120-meric （120） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6ihb__assembly_2__model_1 dimeric （2） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 6ihb__assembly_3__model_1 decameric （10） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 6ihb__assembly_4__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 6ihb__assembly_5__model_1 dimeric （2） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd6ihba_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.5 — ssDNA viruses
Family Family familyb.121.5.2 — Parvoviridae-like VP

CATH v4.4 (1 domains)

Domain ID domain_id6ihbA00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology30 — Empty Capsid Viral Protein 2
Homologous superfamily homologous superfamily10 — Parvovirus coat protein VP1/VP2
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7. Citations (1)