Histone acetyltransferase KAT6A
Homo sapiens
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count | Chain A; UniProt 194–323 | Fragment:DPF domain of MOZ | Histone H3 × 1 ZN ZINC ION × 4 | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M HEPES pH 7.5, 1.4 M sodium citrate tribasic dehydrate. | Resolution 2.00 Å R-free 0.205 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 6LSB | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1M36 Solution Structure of a CCHC Zinc Finger from MOZ Deposited 2002-06-27 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
533–563(31 aa)
Fragment:residues 3-33
|
Not recorded | ZN ZINC ION × 1 |
SOLUTION NMR
NMR measurement conditions
pH 5.6;298 K;Pressure ambient
NMR sample composition
0.5mM MOZ protein (533-563), 1mM TCEP, 0.7mM ZnSO4, 95% H2O, 5% D2O | 95% H2O/5% D2O
|
Resolution not provided |
| 2LN0 Structure of MOZ Deposited 2011-12-15 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
204–313(110 aa)
Fragment:UNP RESIDUES 204-313
|
Not recorded | ZN ZINC ION × 4 |
SOLUTION NMR
NMR measurement conditions
pH 8;298 K;Ionic strength (raw mmCIF value) 0.1;Pressure ambient
NMR sample composition
50 mM HEPES-1, 100 mM sodium chloride-2, 1 mM [U-100% 13C; U-100% 15N] entity_1-3, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
50 mM HEPES-4, 100 mM sodium chloride-5, 1 mM [U-100% 13C; U-100% 15N] entity_1-6, 100% D2O | 100% D2O
|
Resolution not provided |
| 2OZU Crystal structure of human MYST histone acetyltransferase 3 in complex with acetylcoenzyme A Deposited 2007-02-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
497–780(284 aa)
Fragment:Catalytic region: residues 497-780
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | ZN ZINC ION × 1 ACO ACETYL COENZYME *A × 1 ACM ACETAMIDE × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;300 K;12% PEG 5000, 0.1 M Bis-Tris, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.30 Å R-free 0.245 |
| 2RC4 Crystal Structure of the HAT domain of the human MOZ protein Deposited 2007-09-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
501–784(284 aa)
Fragment:HAT domain
|
Not recorded | ZN ZINC ION × 1 ACO ACETYL COENZYME *A × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.5;298 K;sodium cacodylate, PEG 3350, pH 6.5, VAPOR DIFFUSION, temperature 298K
|
Resolution 3.00 Å R-free 0.283 |
| 3V43 Crystal structure of MOZ Deposited 2011-12-14 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
204–313(110 aa)
Fragment:UNP RESIDUES 204-313
|
Not recorded | ZN ZINC ION × 4 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;293 K;0.2M ammonium acetate, 0.1M tri-sodium citrate, 30% w/v PEG 4000, pH 5.6, vapor diffusion, hanging drop, temperature 293K
|
Resolution 1.47 Å R-free 0.176 |
| 4LJN Crystal Structure of MOZ double PHD finger Deposited 2013-07-05 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
194–323(130 aa)
Fragment:unp residues 194-323
|
Not recorded | ZN ZINC ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7;293 K;60% tacsimate, pH 7, VAPOR DIFFUSION, temperature 293K
|
Resolution 3.00 Å R-free 0.242 |
| 4LK9 Crystal Structure of MOZ double PHD finger histone H3 tail complex Deposited 2013-07-07 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
194–323(130 aa)
Fragment:unp residues 194-323
|
Not recorded | ZN ZINC ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;283 K;100 mM Na-Hepes, 1.4 M sodium citrate, pH 7.5, VAPOR DIFFUSION, temperature 283K
|
Resolution 1.60 Å R-free 0.186 |
| 4LKA Crystal Structure of MOZ double PHD finger histone H3K9ac complex Deposited 2013-07-07 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
194–323(130 aa)
Fragment:unp residues 194-323
|
Not recorded | ZN ZINC ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;283 K;100 mM Na-Hepes, 1.4 M sodium citrate, pH 7.5, vapor diffusion, temperature 283K
|
Resolution 1.61 Å R-free 0.185 |
| 4LLB Crystal Structure of MOZ double PHD finger histone H3K14ac complex Deposited 2013-07-09 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
194–323(130 aa)
Fragment:unp residues 194-323
|
Not recorded | ZN ZINC ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;283 K;100 mM Tris-Cl, 200 mM Li2SO4, 30% PEG 4000, pH 8.5, VAPOR DIFFUSION, temperature 283K
|
Resolution 2.50 Å R-free 0.266 |
| 4LLB Crystal Structure of MOZ double PHD finger histone H3K14ac complex Deposited 2013-07-09 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain B
194–323(130 aa)
Fragment:unp residues 194-323
|
Not recorded | ZN ZINC ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;283 K;100 mM Tris-Cl, 200 mM Li2SO4, 30% PEG 4000, pH 8.5, VAPOR DIFFUSION, temperature 283K
|
Resolution 2.50 Å R-free 0.266 |
| 5B75 Crystal structure of MOZ double PHD finger in complex with histone H3 butyrylation at K14 Deposited 2016-06-05 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
194–323(130 aa)
Fragment:UNP residues 194-323
|
Not recorded | ZN ZINC ION × 4 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;290 K;polyethylene glycol 4000, lithium sulfate, Tris
|
Resolution 1.70 Å R-free 0.195 |
| 5B76 Crystal structure of MOZ double PHD finger domain in complex with histone H3 crotonylation at K14 Deposited 2016-06-05 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
194–323(130 aa)
Fragment:UNP residues 194-323
|
Not recorded | ZN ZINC ION × 4 SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;290 K;polyethylene glycol 4000, lithium sulfate, Tris
|
Resolution 1.65 Å R-free 0.236 |
| 5B77 Crystal structrue of MOZ double PHD finger in complex with histone H3 propionylation at K14 Deposited 2016-06-05 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
194–323(130 aa)
Fragment:UNP residues 194-323
|
Not recorded | ZN ZINC ION × 4 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;polyethylene glycol 4000, lithium sulfate, Tris
|
Resolution 1.55 Å R-free 0.204 |
| 5B78 Crystal structure of MOZ double PHD finger mutant-S210D/N235R in complex with histone H3 crotonylation at K14 Deposited 2016-06-05 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
194–323(130 aa)
Fragment:UNP residues 194-323
|
Mutation:S210D, N235R | ZN ZINC ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;polyethylene glycol 4000, lithium sulfate, Tris
|
Resolution 1.40 Å R-free 0.187 |
| 7Y43 Crystal structure of the KAT6A WH domain and its bound double stranded DNA Deposited 2022-06-13 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein–DNA Monomer;Protein × 1 PDB declaration: trimeric |
Chain A
1–85(85 aa)
|
Not recorded | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.2 M magnesium acetate tetrahydrate, 20% polyethylene glycol 3,350
|
Resolution 1.50 Å R-free 0.235 |
| 8DD5 Crystal structure of KAT6A in complex with inhibitor CTx-648 (PF-9363) Deposited 2022-06-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
501–784(284 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | R7L 2,6-dimethoxy-N-{4-methoxy-6-[(1H-pyrazol-1-yl)methyl]-1,2-benzoxazol-3-yl}benzene-1-sulfonamide × 1 ZN ZINC ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;100 mM sodium chloride
100 mM HEPES (pH 6.64)
1.8 M ammonium sulfate
|
Resolution 2.58 Å R-free 0.263 |
| 8H7A Crystal structure of the dimer form KAT6A WH domain with its bound double stranded DNA Deposited 2022-10-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein–DNA Homooligomer;Protein × 2 PDB declaration: tetrameric |
Chain A
1–85(85 aa)
Chain B
1–85(85 aa)
|
Not recorded | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.01 M Magnesium chloride hexahydrate, 0.005 M Nickel(II) chloride hexahydrate, 0.1 M HEPES sodium pH 7.0, 15% w/v Polyethylene glycol 3,350
|
Resolution 1.92 Å R-free 0.235 |
| 8H7A Crystal structure of the dimer form KAT6A WH domain with its bound double stranded DNA Deposited 2022-10-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein–DNA Homooligomer;Protein × 2 PDB declaration: tetrameric |
Chain E
1–85(85 aa)
Chain F
1–85(85 aa)
|
Not recorded | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.01 M Magnesium chloride hexahydrate, 0.005 M Nickel(II) chloride hexahydrate, 0.1 M HEPES sodium pH 7.0, 15% w/v Polyethylene glycol 3,350
|
Resolution 1.92 Å R-free 0.235 |
| 9ARO Crystal structure of AF9 YEATS domain in complex with acetylated at K1007 MOZ Deposited 2024-02-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain E
1005–1008(4 aa)
Chain F
1005–1008(4 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | FMT FORMIC ACID × 2 PEG DI(HYDROXYETHYL)ETHER × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;291 K;0.2 M Sodium formate pH 7.2, 20% (w/v) PEG 3350
|
Resolution 2.30 Å R-free 0.273 |
| 9ARO Crystal structure of AF9 YEATS domain in complex with acetylated at K1007 MOZ Deposited 2024-02-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain G
1005–1008(4 aa)
Chain H
1005–1008(4 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | FMT FORMIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;291 K;0.2 M Sodium formate pH 7.2, 20% (w/v) PEG 3350
|
Resolution 2.30 Å R-free 0.273 |
| 9ARR Crystal structure of AF9 YEATS domain in complex with dicrotonylated at K1007 and K1014 MOZ Deposited 2024-02-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain C
1005–1017(13 aa)
Fragment:residues 1005-1017 (Uniprot numbering)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | LI LITHIUM ION × 2 NO3 NITRATE ION × 4 PEG DI(HYDROXYETHYL)ETHER × 1 GOL GLYCEROL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;291 K;0.2 M Lithium nitrate pH 7.1, 20% w/v PEG 3350
|
Resolution 2.10 Å R-free 0.247 |
| 9DZN KAT6A MYST domain complexed with a H3K14-CoA bisubstrate inhibitor Deposited 2024-10-16 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
501–784(284 aa)
Fragment:MYST domain
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | CMC CARBOXYMETHYL COENZYME *A × 1 ZN ZINC ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.4;294.15 K;1.25 M NH4SO4, 0.28 M NaCl, and 0.1 M HEPES pH 6.4
|
Resolution 1.72 Å R-free 0.245 |
| 9FKR KAT6A IN COMPLEX WITH SMALL MOLECULE INHIBITOR BAY-184 Deposited 2024-06-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
509–778(270 aa)
Chain B
509–778(270 aa)
|
Mutation:R507G, C508S, C638S, C646S, C723S, C773S Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:R507G, C508S, C638S, C646S, C723S, C773S Non-standard monomer:Yes (specific site not provided by mmCIF) | ZN ZINC ION × 2 A1IDR 6-(dimethylamino)-~{N}-(2-phenylphenyl)sulfonyl-1-benzofuran-2-carboxamide × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.3;298 K;RESERVOIR 100 MILLIMOLAR HEPES PH 7.1-7.5, 17-21% PEG 3350 (W/V). PROTEIN CONCENTRATION 7.1 MG/ML, PROTEIN PREINCUBATED WITH 4 MILLIMOLAR ACETYL-COA. DROPS MADE FROM 0.8 MICROLITER PROTEIN AND 0.8 MICROLITER RESERVOIR SOLUTION.
CRYSTAL WASHED IN RESERVOIR SOLUTION, THEN COMPOUND BACKSOAKED FOR 10 DAYS AT 10 MILLIMOLAR.
|
Resolution 2.69 Å R-free 0.238 |
20 other PDB entries and 23 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | KAT6A_HUMAN |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A; PDBConstruct 2–131; UniProt 194–323 |