6o85

Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to eukaryotic translation initiation factor 2 from Homo sapiens

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Translation initiation factor eIF-2B subunit epsilon

Homo sapiens

UniProt Q13144

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Translation initiation factor eIF-2B subunit beta × 2 (P49770) Translation initiation factor eIF-2B subunit delta × 2 (Q9UI10) Translation initiation factor eIF-2B subunit alpha × 2 (Q14232) Translation initiation factor eIF-2B subunit gamma × 2 (Q9NR50) Eukaryotic translation initiation factor 2 subunit 1 × 1 (P05198) Eukaryotic translation initiation factor 2 subunit 3 × 1 (P41091) Eukaryotic translation initiation factor 2 subunit beta × 1 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EI2BE_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–721; UniProt 1–721 Author chain B; PDBConstruct 1–721; UniProt 1–721

Translation initiation factor eIF-2B subunit beta

Homo sapiens

UniProt P49770

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Translation initiation factor eIF-2B subunit epsilon × 2 (Q13144) Translation initiation factor eIF-2B subunit delta × 2 (Q9UI10) Translation initiation factor eIF-2B subunit alpha × 2 (Q14232) Translation initiation factor eIF-2B subunit gamma × 2 (Q9NR50) Eukaryotic translation initiation factor 2 subunit 1 × 1 (P05198) Eukaryotic translation initiation factor 2 subunit 3 × 1 (P41091) Eukaryotic translation initiation factor 2 subunit beta × 1 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EI2BB_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 19–368; UniProt 2–351 Author chain D; PDBConstruct 19–368; UniProt 2–351

Translation initiation factor eIF-2B subunit delta

Homo sapiens

UniProt Q9UI10

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Translation initiation factor eIF-2B subunit epsilon × 2 (Q13144) Translation initiation factor eIF-2B subunit beta × 2 (P49770) Translation initiation factor eIF-2B subunit alpha × 2 (Q14232) Translation initiation factor eIF-2B subunit gamma × 2 (Q9NR50) Eukaryotic translation initiation factor 2 subunit 1 × 1 (P05198) Eukaryotic translation initiation factor 2 subunit 3 × 1 (P41091) Eukaryotic translation initiation factor 2 subunit beta × 1 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EI2BD_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain E; PDBConstruct 1–523; UniProt 1–523 Author chain F; PDBConstruct 1–523; UniProt 1–523

Translation initiation factor eIF-2B subunit alpha

Homo sapiens

UniProt Q14232

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Translation initiation factor eIF-2B subunit epsilon × 2 (Q13144) Translation initiation factor eIF-2B subunit beta × 2 (P49770) Translation initiation factor eIF-2B subunit delta × 2 (Q9UI10) Translation initiation factor eIF-2B subunit gamma × 2 (Q9NR50) Eukaryotic translation initiation factor 2 subunit 1 × 1 (P05198) Eukaryotic translation initiation factor 2 subunit 3 × 1 (P41091) Eukaryotic translation initiation factor 2 subunit beta × 1 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EI2BA_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain G; PDBConstruct 1–305; UniProt 1–305 Author chain H; PDBConstruct 1–305; UniProt 1–305

Translation initiation factor eIF-2B subunit gamma

Homo sapiens

UniProt Q9NR50

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Translation initiation factor eIF-2B subunit epsilon × 2 (Q13144) Translation initiation factor eIF-2B subunit beta × 2 (P49770) Translation initiation factor eIF-2B subunit delta × 2 (Q9UI10) Translation initiation factor eIF-2B subunit alpha × 2 (Q14232) Eukaryotic translation initiation factor 2 subunit 1 × 1 (P05198) Eukaryotic translation initiation factor 2 subunit 3 × 1 (P41091) Eukaryotic translation initiation factor 2 subunit beta × 1 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EI2BG_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain I; PDBConstruct 1–452; UniProt 1–452 Author chain J; PDBConstruct 1–452; UniProt 1–452

Eukaryotic translation initiation factor 2 subunit 1

Homo sapiens

UniProt P05198

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Translation initiation factor eIF-2B subunit epsilon × 2 (Q13144) Translation initiation factor eIF-2B subunit beta × 2 (P49770) Translation initiation factor eIF-2B subunit delta × 2 (Q9UI10) Translation initiation factor eIF-2B subunit alpha × 2 (Q14232) Translation initiation factor eIF-2B subunit gamma × 2 (Q9NR50) Eukaryotic translation initiation factor 2 subunit 3 × 1 (P41091) Eukaryotic translation initiation factor 2 subunit beta × 1 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name IF2A_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain L; PDBConstruct 1–314; UniProt 2–315

Eukaryotic translation initiation factor 2 subunit 3

Homo sapiens

UniProt P41091

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Translation initiation factor eIF-2B subunit epsilon × 2 (Q13144) Translation initiation factor eIF-2B subunit beta × 2 (P49770) Translation initiation factor eIF-2B subunit delta × 2 (Q9UI10) Translation initiation factor eIF-2B subunit alpha × 2 (Q14232) Translation initiation factor eIF-2B subunit gamma × 2 (Q9NR50) Eukaryotic translation initiation factor 2 subunit 1 × 1 (P05198) Eukaryotic translation initiation factor 2 subunit beta × 1 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name IF2G_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain S; PDBConstruct 1–472; UniProt 1–472

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6o85
Deposition date deposition_date2019-03-08
Structure title titleElectron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to eukaryotic translation initiation factor 2 from Homo sapiens
Keywords keywordseukaryotic translation initiation factor 2B, eukaryotic translation initiation factor 2, TRANSLATION; TRANSLATION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6o85__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6o85__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6o85__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)57.27 Å
Rg (electron density)56.10 Å
Total Rg55.54 Å
Atom count28546
Residues4114
Excluded volume504870 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6o85__assembly_1__model_1 tridecameric (13) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (9)

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6. Fold Classification (SCOP + CATH) 6 domains

CATH v4.4 (6 domains)

Domain ID domain_id6o85A01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology550 — Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
Homologous superfamily homologous superfamily10 — Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
Domain ID domain_id6o85B01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology550 — Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
Homologous superfamily homologous superfamily10 — Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
Domain ID domain_id6o85G01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily1070 — Translation initiation factor eIF-2B, N-terminal domain
Domain ID domain_id6o85G02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10470 — Translation initiation factor eif-2b; domain 2
Domain ID domain_id6o85H01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily1070 — Translation initiation factor eIF-2B, N-terminal domain
Domain ID domain_id6o85H02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10470 — Translation initiation factor eif-2b; domain 2
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7. Citations (1)