6uov

Cryo-EM reconstruction of the PrgHK periplasmic ring from Salmonella's needle complex assembled in the absence of the export apparatus

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Lipoprotein PrgK

OrganismNot specified

UniProt P41786

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 Protein PrgH × 23 (P41783) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRGK_SALTY
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–252; UniProt 1–252 Author chain C; PDBConstruct 1–252; UniProt 1–252 Author chain E; PDBConstruct 1–252; UniProt 1–252 Author chain G; PDBConstruct 1–252; UniProt 1–252 Author chain I; PDBConstruct 1–252; UniProt 1–252 Author chain K; PDBConstruct 1–252; UniProt 1–252 Author chain M; PDBConstruct 1–252; UniProt 1–252 Author chain O; PDBConstruct 1–252; UniProt 1–252 Author chain Q; PDBConstruct 1–252; UniProt 1–252 Author chain S; PDBConstruct 1–252; UniProt 1–252 Author chain U; PDBConstruct 1–252; UniProt 1–252 Author chain W; PDBConstruct 1–252; UniProt 1–252 Author chain Y; PDBConstruct 1–252; UniProt 1–252 Author chain a; PDBConstruct 1–252; UniProt 1–252 Author chain c; PDBConstruct 1–252; UniProt 1–252 Author chain e; PDBConstruct 1–252; UniProt 1–252 Author chain g; PDBConstruct 1–252; UniProt 1–252 Author chain i; PDBConstruct 1–252; UniProt 1–252 Author chain k; PDBConstruct 1–252; UniProt 1–252 Author chain m; PDBConstruct 1–252; UniProt 1–252 Author chain o; PDBConstruct 1–252; UniProt 1–252 Author chain q; PDBConstruct 1–252; UniProt 1–252 Author chain s; PDBConstruct 1–252; UniProt 1–252

Protein PrgH

OrganismNot specified

UniProt P41783

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 Lipoprotein PrgK × 23 (P41786) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRGH_SALTY
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–392; UniProt 1–392 Author chain D; PDBConstruct 1–392; UniProt 1–392 Author chain F; PDBConstruct 1–392; UniProt 1–392 Author chain H; PDBConstruct 1–392; UniProt 1–392 Author chain J; PDBConstruct 1–392; UniProt 1–392 Author chain L; PDBConstruct 1–392; UniProt 1–392 Author chain N; PDBConstruct 1–392; UniProt 1–392 Author chain P; PDBConstruct 1–392; UniProt 1–392 Author chain R; PDBConstruct 1–392; UniProt 1–392 Author chain T; PDBConstruct 1–392; UniProt 1–392 Author chain V; PDBConstruct 1–392; UniProt 1–392 Author chain X; PDBConstruct 1–392; UniProt 1–392 Author chain Z; PDBConstruct 1–392; UniProt 1–392 Author chain b; PDBConstruct 1–392; UniProt 1–392 Author chain d; PDBConstruct 1–392; UniProt 1–392 Author chain f; PDBConstruct 1–392; UniProt 1–392 Author chain h; PDBConstruct 1–392; UniProt 1–392 Author chain j; PDBConstruct 1–392; UniProt 1–392 Author chain l; PDBConstruct 1–392; UniProt 1–392 Author chain n; PDBConstruct 1–392; UniProt 1–392 Author chain p; PDBConstruct 1–392; UniProt 1–392 Author chain r; PDBConstruct 1–392; UniProt 1–392 Author chain t; PDBConstruct 1–392; UniProt 1–392

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6uov
Deposition date deposition_date2019-10-15
Structure title titleCryo-EM reconstruction of the PrgHK periplasmic ring from Salmonella's needle complex assembled in the absence of the export apparatus
Keywords keywordsBACTERIAL NANOMACHINE, TYPE III SECRETION SYSTEM, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6uov__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6uov__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6uov__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)82.62 Å
Rg (electron density)82.44 Å
Total Rg82.57 Å
Atom count69851
Residues8694
Excluded volume1237800 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6uov__assembly_1__model_1 46-meric (46) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 69 domains

CATH v4.4 (69 domains)

Domain ID domain_id6uovB01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovB02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovB03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovD01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovD02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovD03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovF01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovF02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovF03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovH01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovH02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovH03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovJ01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovJ02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovJ03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovL01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovL02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovL03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovN01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovN02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovN03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovP01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovP02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovP03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovR01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovR02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovR03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovT01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovT02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovT03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovV01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovV02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovV03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovX01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovX02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovX03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovZ01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovZ02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovZ03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovb01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovb02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovb03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovd01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovd02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovd03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovf01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovf02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovf03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovh01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovh02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovh03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovj01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovj02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovj03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovl01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovl02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovl03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovn01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovn02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovn03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovp01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovp02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovp03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovr01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovr02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovr03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
Domain ID domain_id6uovt01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1780 —
Domain ID domain_id6uovt02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily170 —
Domain ID domain_id6uovt03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1770 —
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7. Citations (1)