6q15

Structure of the Salmonella SPI-1 injectisome needle complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Lipoprotein PrgK

OrganismNot specified

UniProt P41786

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 110 Protein PrgH × 24 (P41783) Protein InvG × 16 (P35672) Surface presentation of antigens protein SpaP × 5 (P40700) Surface presentation of antigens protein SpaR × 1 (P40701) Surface presentation of antigens protein SpaQ × 4 (P0A1L7) Protein PrgJ × 6 (P41785) Protein PrgI × 30 (P41784) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRGK_SALTY
Isoform —
PDB entities 1
Chains and sequence ranges Author chain AA; PDBConstruct 1–252; UniProt 1–252 Author chain AB; PDBConstruct 1–252; UniProt 1–252 Author chain AC; PDBConstruct 1–252; UniProt 1–252 Author chain AD; PDBConstruct 1–252; UniProt 1–252 Author chain AE; PDBConstruct 1–252; UniProt 1–252 Author chain AF; PDBConstruct 1–252; UniProt 1–252 Author chain AG; PDBConstruct 1–252; UniProt 1–252 Author chain AH; PDBConstruct 1–252; UniProt 1–252 Author chain AI; PDBConstruct 1–252; UniProt 1–252 Author chain AJ; PDBConstruct 1–252; UniProt 1–252 Author chain AK; PDBConstruct 1–252; UniProt 1–252 Author chain AL; PDBConstruct 1–252; UniProt 1–252 Author chain o; PDBConstruct 1–252; UniProt 1–252 Author chain p; PDBConstruct 1–252; UniProt 1–252 Author chain q; PDBConstruct 1–252; UniProt 1–252 Author chain r; PDBConstruct 1–252; UniProt 1–252 Author chain s; PDBConstruct 1–252; UniProt 1–252 Author chain t; PDBConstruct 1–252; UniProt 1–252 Author chain u; PDBConstruct 1–252; UniProt 1–252 Author chain v; PDBConstruct 1–252; UniProt 1–252 Author chain w; PDBConstruct 1–252; UniProt 1–252 Author chain x; PDBConstruct 1–252; UniProt 1–252 Author chain y; PDBConstruct 1–252; UniProt 1–252 Author chain z; PDBConstruct 1–252; UniProt 1–252

Protein PrgH

OrganismNot specified

UniProt P41783

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 110 Lipoprotein PrgK × 24 (P41786) Protein InvG × 16 (P35672) Surface presentation of antigens protein SpaP × 5 (P40700) Surface presentation of antigens protein SpaR × 1 (P40701) Surface presentation of antigens protein SpaQ × 4 (P0A1L7) Protein PrgJ × 6 (P41785) Protein PrgI × 30 (P41784) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRGH_SALTY
Isoform —
PDB entities 2
Chains and sequence ranges Author chain E; PDBConstruct 1–392; UniProt 1–392 Author chain R; PDBConstruct 1–392; UniProt 1–392 Author chain S; PDBConstruct 1–392; UniProt 1–392 Author chain T; PDBConstruct 1–392; UniProt 1–392 Author chain U; PDBConstruct 1–392; UniProt 1–392 Author chain V; PDBConstruct 1–392; UniProt 1–392 Author chain W; PDBConstruct 1–392; UniProt 1–392 Author chain X; PDBConstruct 1–392; UniProt 1–392 Author chain Y; PDBConstruct 1–392; UniProt 1–392 Author chain Z; PDBConstruct 1–392; UniProt 1–392 Author chain a; PDBConstruct 1–392; UniProt 1–392 Author chain b; PDBConstruct 1–392; UniProt 1–392 Author chain c; PDBConstruct 1–392; UniProt 1–392 Author chain d; PDBConstruct 1–392; UniProt 1–392 Author chain e; PDBConstruct 1–392; UniProt 1–392 Author chain f; PDBConstruct 1–392; UniProt 1–392 Author chain g; PDBConstruct 1–392; UniProt 1–392 Author chain h; PDBConstruct 1–392; UniProt 1–392 Author chain i; PDBConstruct 1–392; UniProt 1–392 Author chain j; PDBConstruct 1–392; UniProt 1–392 Author chain k; PDBConstruct 1–392; UniProt 1–392 Author chain l; PDBConstruct 1–392; UniProt 1–392 Author chain m; PDBConstruct 1–392; UniProt 1–392 Author chain n; PDBConstruct 1–392; UniProt 1–392

Protein InvG

OrganismNot specified

UniProt P35672

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 110 Lipoprotein PrgK × 24 (P41786) Protein PrgH × 24 (P41783) Surface presentation of antigens protein SpaP × 5 (P40700) Surface presentation of antigens protein SpaR × 1 (P40701) Surface presentation of antigens protein SpaQ × 4 (P0A1L7) Protein PrgJ × 6 (P41785) Protein PrgI × 30 (P41784) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name INVG_SALTY
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A; PDBConstruct 1–562; UniProt 1–562 Author chain B; PDBConstruct 1–562; UniProt 1–562 Author chain C; PDBConstruct 1–562; UniProt 1–562 Author chain D; PDBConstruct 1–562; UniProt 1–562 Author chain F; PDBConstruct 1–562; UniProt 1–562 Author chain G; PDBConstruct 1–562; UniProt 1–562 Author chain H; PDBConstruct 1–562; UniProt 1–562 Author chain I; PDBConstruct 1–562; UniProt 1–562 Author chain J; PDBConstruct 1–562; UniProt 1–562 Author chain K; PDBConstruct 1–562; UniProt 1–562 Author chain L; PDBConstruct 1–562; UniProt 1–562 Author chain M; PDBConstruct 1–562; UniProt 1–562 Author chain N; PDBConstruct 1–562; UniProt 1–562 Author chain O; PDBConstruct 1–562; UniProt 1–562 Author chain P; PDBConstruct 1–562; UniProt 1–562 Author chain Q; PDBConstruct 1–562; UniProt 1–562

Surface presentation of antigens protein SpaP

OrganismNot specified

UniProt P40700

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 110 Lipoprotein PrgK × 24 (P41786) Protein PrgH × 24 (P41783) Protein InvG × 16 (P35672) Surface presentation of antigens protein SpaR × 1 (P40701) Surface presentation of antigens protein SpaQ × 4 (P0A1L7) Protein PrgJ × 6 (P41785) Protein PrgI × 30 (P41784) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPAP_SALTY
Isoform —
PDB entities 4
Chains and sequence ranges Author chain 0; PDBConstruct 1–224; UniProt 1–224 Author chain 1; PDBConstruct 1–224; UniProt 1–224 Author chain 2; PDBConstruct 1–224; UniProt 1–224 Author chain 3; PDBConstruct 1–224; UniProt 1–224 Author chain 4; PDBConstruct 1–224; UniProt 1–224

Surface presentation of antigens protein SpaR

OrganismNot specified

UniProt P40701

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 110 Lipoprotein PrgK × 24 (P41786) Protein PrgH × 24 (P41783) Protein InvG × 16 (P35672) Surface presentation of antigens protein SpaP × 5 (P40700) Surface presentation of antigens protein SpaQ × 4 (P0A1L7) Protein PrgJ × 6 (P41785) Protein PrgI × 30 (P41784) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPAR_SALTY
Isoform —
PDB entities 5
Chains and sequence ranges Author chain 5; PDBConstruct 1–263; UniProt 1–263

Surface presentation of antigens protein SpaQ

OrganismNot specified

UniProt P0A1L7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 110 Lipoprotein PrgK × 24 (P41786) Protein PrgH × 24 (P41783) Protein InvG × 16 (P35672) Surface presentation of antigens protein SpaP × 5 (P40700) Surface presentation of antigens protein SpaR × 1 (P40701) Protein PrgJ × 6 (P41785) Protein PrgI × 30 (P41784) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPAQ_SALTY
Isoform —
PDB entities 6
Chains and sequence ranges Author chain 6; PDBConstruct 1–86; UniProt 1–86 Author chain 7; PDBConstruct 1–86; UniProt 1–86 Author chain 8; PDBConstruct 1–86; UniProt 1–86 Author chain 9; PDBConstruct 1–86; UniProt 1–86

Protein PrgJ

OrganismNot specified

UniProt P41785

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 110 Lipoprotein PrgK × 24 (P41786) Protein PrgH × 24 (P41783) Protein InvG × 16 (P35672) Surface presentation of antigens protein SpaP × 5 (P40700) Surface presentation of antigens protein SpaR × 1 (P40701) Surface presentation of antigens protein SpaQ × 4 (P0A1L7) Protein PrgI × 30 (P41784) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRGJ_SALTY
Isoform —
PDB entities 7
Chains and sequence ranges Author chain AM; PDBConstruct 1–101; UniProt 1–101 Author chain AN; PDBConstruct 1–101; UniProt 1–101 Author chain AO; PDBConstruct 1–101; UniProt 1–101 Author chain AP; PDBConstruct 1–101; UniProt 1–101 Author chain AQ; PDBConstruct 1–101; UniProt 1–101 Author chain AR; PDBConstruct 1–101; UniProt 1–101

Protein PrgI

OrganismNot specified

UniProt P41784

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 110 Lipoprotein PrgK × 24 (P41786) Protein PrgH × 24 (P41783) Protein InvG × 16 (P35672) Surface presentation of antigens protein SpaP × 5 (P40700) Surface presentation of antigens protein SpaR × 1 (P40701) Surface presentation of antigens protein SpaQ × 4 (P0A1L7) Protein PrgJ × 6 (P41785) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRGI_SALTY
Isoform —
PDB entities 8
Chains and sequence ranges Author chain AS; PDBConstruct 1–80; UniProt 1–80 Author chain AT; PDBConstruct 1–80; UniProt 1–80 Author chain AU; PDBConstruct 1–80; UniProt 1–80 Author chain AV; PDBConstruct 1–80; UniProt 1–80 Author chain AW; PDBConstruct 1–80; UniProt 1–80 Author chain AX; PDBConstruct 1–80; UniProt 1–80 Author chain AY; PDBConstruct 1–80; UniProt 1–80 Author chain AZ; PDBConstruct 1–80; UniProt 1–80 Author chain BA; PDBConstruct 1–80; UniProt 1–80 Author chain BB; PDBConstruct 1–80; UniProt 1–80 Author chain BC; PDBConstruct 1–80; UniProt 1–80 Author chain BD; PDBConstruct 1–80; UniProt 1–80 Author chain BE; PDBConstruct 1–80; UniProt 1–80 Author chain BF; PDBConstruct 1–80; UniProt 1–80 Author chain BG; PDBConstruct 1–80; UniProt 1–80 Author chain BH; PDBConstruct 1–80; UniProt 1–80 Author chain BI; PDBConstruct 1–80; UniProt 1–80 Author chain BJ; PDBConstruct 1–80; UniProt 1–80 Author chain BK; PDBConstruct 1–80; UniProt 1–80 Author chain BL; PDBConstruct 1–80; UniProt 1–80 Author chain BM; PDBConstruct 1–80; UniProt 1–80 Author chain BN; PDBConstruct 1–80; UniProt 1–80 Author chain BO; PDBConstruct 1–80; UniProt 1–80 Author chain BP; PDBConstruct 1–80; UniProt 1–80 Author chain BQ; PDBConstruct 1–80; UniProt 1–80 Author chain BR; PDBConstruct 1–80; UniProt 1–80 Author chain BS; PDBConstruct 1–80; UniProt 1–80 Author chain BT; PDBConstruct 1–80; UniProt 1–80 Author chain BU; PDBConstruct 1–80; UniProt 1–80 Author chain BV; PDBConstruct 1–80; UniProt 1–80

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6q15
Deposition date deposition_date2019-08-02
Structure title titleStructure of the Salmonella SPI-1 injectisome needle complex
Keywords keywordsBacterial secretion, type III secretion, PROTEIN TRANSPORT; PROTEIN TRANSPORT
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6q15__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6q15__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6q15__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)99.27 Å
Rg (electron density)98.58 Å
Total Rg98.60 Å
Atom count170695
Residues21651
Excluded volume3043400 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6q15__assembly_1__model_1 110-meric (110) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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7. Citations (1)