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6x9f

Pseudomonas aeruginosa MurC with AZ8074

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

UDP-N-acetylmuramate--L-alanine ligase

Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

UniProt Q9HW02

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol × 1 1,2-ETHANEDIOL × 5 DIMETHYL SULFOXIDE × 1 water × 1 Consistent with protein count
2 Protein monomer Monomer Protein 1 [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol × 1 1,2-ETHANEDIOL × 6 DIMETHYL SULFOXIDE × 5 water × 1 Consistent with protein count
3 Protein monomer Monomer Protein 1 [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol × 1 1,2-ETHANEDIOL × 5 water × 1 Consistent with protein count
4 Protein monomer Monomer Protein 1 [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol × 1 1,2-ETHANEDIOL × 4 DIMETHYL SULFOXIDE × 2 CHLORIDE ION × 1 water × 1 Consistent with protein count
5 Protein monomer Monomer Protein 1 [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol × 1 1,2-ETHANEDIOL × 4 DIMETHYL SULFOXIDE × 2 CHLORIDE ION × 1 water × 1 Consistent with protein count
6 Protein monomer Monomer Protein 1 [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol × 1 1,2-ETHANEDIOL × 3 DIMETHYL SULFOXIDE × 1 CHLORIDE ION × 1 water × 1 Consistent with protein count
7 Protein monomer Monomer Protein 1 [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol × 1 1,2-ETHANEDIOL × 2 DIMETHYL SULFOXIDE × 1 CHLORIDE ION × 1 water × 1 Consistent with protein count
8 Protein monomer Monomer Protein 1 [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol × 1 1,2-ETHANEDIOL × 3 DIMETHYL SULFOXIDE × 1 CHLORIDE ION × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
6x9f 6x9f 6x9f 6x9f 6x9f 6x9f 6x9f 6x9f 6x9n 6x9n 6x9n 6x9n

16 assemblies; showing the first 12

Homodimer
29zm 8dof 8egn 8ewa 9d9k 9d9m 9s8i

7 assemblies

Homotetramer
5vvw 5vvw 8egm 8egm

4 assemblies

Other homooligomers

None

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name MURC_PSEAE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 2–466； UniProt 16–480 Author chain B； PDBConstruct 2–466； UniProt 16–480 Author chain C； PDBConstruct 2–466； UniProt 16–480 Author chain D； PDBConstruct 2–466； UniProt 16–480 Author chain E； PDBConstruct 2–466； UniProt 16–480 Author chain F； PDBConstruct 2–466； UniProt 16–480 Author chain G； PDBConstruct 2–466； UniProt 16–480 Author chain H； PDBConstruct 2–466； UniProt 16–480

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6x9f
Deposition date deposition_date2020-06-02
Structure title titlePseudomonas aeruginosa MurC with AZ8074
Keywords keywordsMurC, AZ8074, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, LIGASE; LIGASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6x9f__assembly_7__model_1

Assembly 7 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6x9f__assembly_7__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6x9f__assembly_7__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）21.67 Å
Rg (electron density)20.75 Å
Total Rg21.49 Å
Atom count2274
Residues304
Excluded volume40428 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6x9f__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6x9f__assembly_2__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 6x9f__assembly_3__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 6x9f__assembly_4__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 6x9f__assembly_5__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 6x9f__assembly_6__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
7 1 6x9f__assembly_7__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
8 1 6x9f__assembly_8__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (6)

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6. Fold Classification (SCOP + CATH) 24 domains

SCOP 2.08 (24 domains)

Domain ID domain_idd6x9fa1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.5 — MurCD N-terminal domain
Superfamily Superfamily superfamilyc.5.1 — MurCD N-terminal domain
Family Family familyc.5.1.0 — automated matches
Domain ID domain_idd6x9fa2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.72 — Ribokinase-like
Superfamily Superfamily superfamilyc.72.2 — MurD-like peptide ligases, catalytic domain
Family Family familyc.72.2.0 — automated matches
Domain ID domain_idd6x9fa3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd6x9fb1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.5 — MurCD N-terminal domain
Superfamily Superfamily superfamilyc.5.1 — MurCD N-terminal domain
Family Family familyc.5.1.0 — automated matches
Domain ID domain_idd6x9fb2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.72 — Ribokinase-like
Superfamily Superfamily superfamilyc.72.2 — MurD-like peptide ligases, catalytic domain
Family Family familyc.72.2.0 — automated matches
Domain ID domain_idd6x9fb3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd6x9fc1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.5 — MurCD N-terminal domain
Superfamily Superfamily superfamilyc.5.1 — MurCD N-terminal domain
Family Family familyc.5.1.0 — automated matches
Domain ID domain_idd6x9fc2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.72 — Ribokinase-like
Superfamily Superfamily superfamilyc.72.2 — MurD-like peptide ligases, catalytic domain
Family Family familyc.72.2.0 — automated matches
Domain ID domain_idd6x9fc3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd6x9fd1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.5 — MurCD N-terminal domain
Superfamily Superfamily superfamilyc.5.1 — MurCD N-terminal domain
Family Family familyc.5.1.0 — automated matches
Domain ID domain_idd6x9fd2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.72 — Ribokinase-like
Superfamily Superfamily superfamilyc.72.2 — MurD-like peptide ligases, catalytic domain
Family Family familyc.72.2.0 — automated matches
Domain ID domain_idd6x9fd3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd6x9fe1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.5 — MurCD N-terminal domain
Superfamily Superfamily superfamilyc.5.1 — MurCD N-terminal domain
Family Family familyc.5.1.0 — automated matches
Domain ID domain_idd6x9fe2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.72 — Ribokinase-like
Superfamily Superfamily superfamilyc.72.2 — MurD-like peptide ligases, catalytic domain
Family Family familyc.72.2.0 — automated matches
Domain ID domain_idd6x9fe3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd6x9ff1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.5 — MurCD N-terminal domain
Superfamily Superfamily superfamilyc.5.1 — MurCD N-terminal domain
Family Family familyc.5.1.0 — automated matches
Domain ID domain_idd6x9ff2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.72 — Ribokinase-like
Superfamily Superfamily superfamilyc.72.2 — MurD-like peptide ligases, catalytic domain
Family Family familyc.72.2.0 — automated matches
Domain ID domain_idd6x9ff3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd6x9fg1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.5 — MurCD N-terminal domain
Superfamily Superfamily superfamilyc.5.1 — MurCD N-terminal domain
Family Family familyc.5.1.0 — automated matches
Domain ID domain_idd6x9fg2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.72 — Ribokinase-like
Superfamily Superfamily superfamilyc.72.2 — MurD-like peptide ligases, catalytic domain
Family Family familyc.72.2.0 — automated matches
Domain ID domain_idd6x9fg3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd6x9fh1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.5 — MurCD N-terminal domain
Superfamily Superfamily superfamilyc.5.1 — MurCD N-terminal domain
Family Family familyc.5.1.0 — automated matches
Domain ID domain_idd6x9fh2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.72 — Ribokinase-like
Superfamily Superfamily superfamilyc.72.2 — MurD-like peptide ligases, catalytic domain
Family Family familyc.72.2.0 — automated matches
Domain ID domain_idd6x9fh3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
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7. Citations (1)