7jow

Crystal structure of BbKI complexed with Human Kallikrein 4

Method: X-RAY DIFFRACTION Dmax: 76.4 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Kallikrein 4 (Prostase, enamel matrix, prostate), isoform CRA_a

Homo sapiens

UniProt A0A0C4DFQ5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 31–253 Not recorded Kunitz-type inihibitor × 1 (Q6VEQ7) CD CADMIUM ION × 1 2PE NONAETHYLENE GLYCOL × 1 URE UREA × 1 CL CHLORIDE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.4M Ammounium Sulfate, 2% PEG400 10mM CdCl2 Resolution 1.91 Å R-free 0.207

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

5 other PDB entries and 12 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A0C4DFQ5_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain E; PDBConstruct 1–223; UniProt 31–253

Kunitz-type inihibitor

Bauhinia bauhinioides

UniProt Q6VEQ7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain I; UniProt 19–181 Not recorded Kallikrein 4 (Prostase, enamel matrix, prostate), isoform CRA_a × 1 (A0A0C4DFQ5) CD CADMIUM ION × 1 2PE NONAETHYLENE GLYCOL × 1 URE UREA × 1 CL CHLORIDE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.4M Ammounium Sulfate, 2% PEG400 10mM CdCl2 Resolution 1.91 Å R-free 0.207

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 80 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q6VEQ7_BAUBA
Isoform
PDB entities 2
Chains and sequence ranges Author chain I; PDBConstruct 2–164; UniProt 19–181

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7jow

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7jow
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id7jow
Deposition date deposition_date2020-08-07
Structure title titleCrystal structure of BbKI complexed with Human Kallikrein 4
Keywords keywordsinhibitor, PLANT PROTEIN, HYDROLASE-HYDROLASE INHIBITOR complex; HYDROLASE/HYDROLASE INHIBITOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier22.88
Radius of gyration Rg (electron density) rg_electron21.84
Forward intensity I(0) i031069600.00
Molecular weight molecular_weight42066.0 kDa
Excluded volume excluded_volume52330 ų
Envelope volume envelope_volume62100 ų
Hydration-shell volume shell_volume23878 ų
Envelope diameter envelope_diameter78.0
Shell Rg shell_rg28.53
Envelope Rg envelope_rg22.19
Shape Rg shape_rg21.84
Total Rg total_rg22.65
Total atoms total_atoms2947
Residues n_residues383
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax76.4
Rg (real space) rg_real22.90
Rg uncertainty (real space) rg_real_error0.56
I(0) (real space) i0_real3.1070e+07
I(0) uncertainty (real space) i0_real_error4.4870e+05
Rg (reciprocal space) rg_reciprocal22.90
I(0) (reciprocal space) i0_reciprocal31070000.0000
Solution quality estimate total_estimate0.7046
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary25.9
Skewness Skewness skewness0.425
Kurtosis Kurtosis kurtosis-0.224
Angular range angular_range— – 0.3450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha12000000.0000
Real-space data points n_real_points66
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.798; Stabil: 1.000; Sysdev: 0.307; Positv: 1.000; Valcen: 0.989; Smooth: 0.852

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

7. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd7jowe_
Class classb — All beta proteins
Fold Fold foldb.47 — Trypsin-like serine proteases
Superfamily Superfamily superfamilyb.47.1 — Trypsin-like serine proteases
Family Family familyb.47.1.0 — automated matches

8. Citations (1)

9. Files and Curves (10)