7jqk

Crystal structure of the R64A mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Human Kallikrein 4

Method: X-RAY DIFFRACTION Dmax: 76.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Kallikrein-4

Homo sapiens

UniProt Q9Y5K2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 31–253 Non-standard monomer:Yes (specific site not provided by mmCIF) Kunitz-type inihibitor × 1 (Q6VEQ7) 2PE NONAETHYLENE GLYCOL × 2 CD CADMIUM ION × 2 CL CHLORIDE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0M Ammonium Sulfate 2% PEG400, 10mM CdCl2 at pH 7.5 Resolution 1.33 Å R-free 0.153

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 35 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KLK4_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain E; PDBConstruct 1–223; UniProt 31–253

Kunitz-type inihibitor

Bauhinia bauhinioides

UniProt Q6VEQ7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain I; UniProt 19–183 Mutation:R64A Kallikrein-4 × 1 (Q9Y5K2) 2PE NONAETHYLENE GLYCOL × 2 CD CADMIUM ION × 2 CL CHLORIDE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0M Ammonium Sulfate 2% PEG400, 10mM CdCl2 at pH 7.5 Resolution 1.33 Å R-free 0.153

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 80 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q6VEQ7_BAUBA
Isoform
PDB entities 2
Chains and sequence ranges Author chain I; PDBConstruct 1–165; UniProt 19–183

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7jqk

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7jqk
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7jqk
Deposition date deposition_date2020-08-11
Structure title titleCrystal structure of the R64A mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Human Kallikrein 4
Keywords keywordsHuman Kallikrein 4, Bauhinia Bauhiniordes Kallikrein Inhibitor, STRUCTURAL PROTEIN, HYDROLASE-INHIBITOR complex; STRUCTURAL PROTEIN, HYDROLASE/INHIBITOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.03
Radius of gyration Rg (electron density) rg_electron21.98
Forward intensity I(0) i031715200.00
Molecular weight molecular_weight42419.0 kDa
Excluded volume excluded_volume52662 ų
Envelope volume envelope_volume62617 ų
Hydration-shell volume shell_volume23949 ų
Envelope diameter envelope_diameter78.2
Shell Rg shell_rg28.61
Envelope Rg envelope_rg22.27
Shape Rg shape_rg21.97
Total Rg total_rg22.80
Total atoms total_atoms2963
Residues n_residues383
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax76.1
Rg (real space) rg_real23.04
Rg uncertainty (real space) rg_real_error0.46
I(0) (real space) i0_real3.1720e+07
I(0) uncertainty (real space) i0_real_error4.1890e+05
Rg (reciprocal space) rg_reciprocal23.04
I(0) (reciprocal space) i0_reciprocal31720000.0000
Solution quality estimate total_estimate0.8814
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary25.8
Skewness Skewness skewness0.405
Kurtosis Kurtosis kurtosis-0.255
Angular range angular_range— – 0.3450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha10170000.0000
Real-space data points n_real_points66
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.825; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.985

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

7. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd7jqke_
Class classb — All beta proteins
Fold Fold foldb.47 — Trypsin-like serine proteases
Superfamily Superfamily superfamilyb.47.1 — Trypsin-like serine proteases
Family Family familyb.47.1.0 — automated matches

8. Citations (1)

9. Files and Curves (10)