7mk6

KcsA open gate E71V mutant with sodium

Method: X-RAY DIFFRACTION Dmax: 111.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

pH-gated potassium channel KcsA

Streptomyces lividans

UniProt P0A334

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 12 PDB declaration: dodecameric(12) Consistent with protein copy count Chain C; UniProt 26–121 Mutation:A28C, E71V, L90C, R117Q, E118C, E120Q, R121Q Fab heavy chain × 4 Fab light chain × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;293 K;50 mM sodium/ammonium acetate pH 5.5, 50 mM Magnesium acetate, 25% PEG 400 Resolution 3.10 Å R-free 0.253

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

86 other PDB entries and 96 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCSA_STRLI
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–96; UniProt 26–121

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7mk6

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7mk6
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7mk6
Deposition date deposition_date2021-04-21
Structure title titleKcsA open gate E71V mutant with sodium
Keywords keywordsion channels, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier28.12
Radius of gyration Rg (electron density) rg_electron28.23
Forward intensity I(0) i045244200.00
Molecular weight molecular_weight53065.0 kDa
Excluded volume excluded_volume66616 ų
Envelope volume envelope_volume85625 ų
Hydration-shell volume shell_volume27265 ų
Envelope diameter envelope_diameter116.2
Shell Rg shell_rg33.04
Envelope Rg envelope_rg28.61
Shape Rg shape_rg28.18
Total Rg total_rg28.88
Total atoms total_atoms3741
Residues n_residues495
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax111.4
Rg (real space) rg_real28.50
Rg uncertainty (real space) rg_real_error1.46
I(0) (real space) i0_real4.5240e+07
I(0) uncertainty (real space) i0_real_error7.6340e+05
Rg (reciprocal space) rg_reciprocal28.38
I(0) (reciprocal space) i0_reciprocal45240000.0000
Solution quality estimate total_estimate0.7669
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary29.8
Skewness Skewness skewness0.714
Kurtosis Kurtosis kurtosis0.472
Angular range angular_range— – 0.2800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha7094000.0000
Real-space data points n_real_points57
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.490; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.511; Smooth: 0.989

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id7mk6A01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7mk6A02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7mk6B01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7mk6B02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (1)

9. Files and Curves (10)