2a9h

NMR structural studies of a potassium channel / charybdotoxin complex

Method: SOLUTION NMR Dmax: 76.0 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Voltage-gated potassium channel

Streptomyces lividans

UniProt P0A334

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain A; UniProt 1–132 Chain B; UniProt 1–132 Chain C; UniProt 1–132 Chain D; UniProt 1–132 Mutation:Q58A, T61S, R64D, F103Y, T107F, L110V charybdotoxin × 1 SOLUTION NMR NMR measurement conditions:pH 7.5;315 K;Pressure ambient NMR sample composition:1 mM KcsA, 2H and selectively 13C-methyl labeled in 20 mM sodium phosphate (pH 7.5), 5 mM KCl, 1 mM DTT, and 80 mM foscholine-12, 90% H2O/10% D2O or 100% D2O | 90% H2O/10% D2O or 100% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

86 other PDB entries and 96 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCSA_STRLI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 24–155; UniProt 1–132 Author chain B; PDBConstruct 24–155; UniProt 1–132 Author chain C; PDBConstruct 24–155; UniProt 1–132 Author chain D; PDBConstruct 24–155; UniProt 1–132

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2a9h

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2a9h
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2a9h
Deposition date deposition_date2005-07-11
Structure title titleNMR structural studies of a potassium channel / charybdotoxin complex
Keywords keywordsPotassium channel, KcsA, membrane protein, METAL TRANSPORT; METAL TRANSPORT, membrane protein
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier22.06
Radius of gyration Rg (electron density) rg_electron21.02
Forward intensity I(0) i029383800.00
Molecular weight molecular_weight44968.0 kDa
Excluded volume excluded_volume57610 ų
Envelope volume envelope_volume63852 ų
Hydration-shell volume shell_volume24807 ų
Envelope diameter envelope_diameter78.0
Shell Rg shell_rg28.40
Envelope Rg envelope_rg21.48
Shape Rg shape_rg21.02
Total Rg total_rg21.98
Total atoms total_atoms6381
Residues n_residues424
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax76.0
Rg (real space) rg_real22.01
Rg uncertainty (real space) rg_real_error0.57
I(0) (real space) i0_real2.9380e+07
I(0) uncertainty (real space) i0_real_error4.1070e+05
Rg (reciprocal space) rg_reciprocal22.02
I(0) (reciprocal space) i0_reciprocal29380000.0000
Solution quality estimate total_estimate0.6645
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary26.1
Skewness Skewness skewness0.340
Kurtosis Kurtosis kurtosis-0.205
Angular range angular_range— – 0.3600 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha4320000.0000
Real-space data points n_real_points68
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.751; Stabil: 1.000; Sysdev: 0.145; Positv: 1.000; Valcen: 0.980; Smooth: 0.965

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 9 domains

SCOP 2.08 (5 domains)

Domain ID domain_idd2a9ha1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.14 — Gated ion channels
Superfamily Superfamily superfamilyf.14.1 — Voltage-gated ion channels
Family Family familyf.14.1.1 — Voltage-gated potassium channels
Domain ID domain_idd2a9hb_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.14 — Gated ion channels
Superfamily Superfamily superfamilyf.14.1 — Voltage-gated ion channels
Family Family familyf.14.1.1 — Voltage-gated potassium channels
Domain ID domain_idd2a9hc_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.14 — Gated ion channels
Superfamily Superfamily superfamilyf.14.1 — Voltage-gated ion channels
Family Family familyf.14.1.1 — Voltage-gated potassium channels
Domain ID domain_idd2a9hd_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.14 — Gated ion channels
Superfamily Superfamily superfamilyf.14.1 — Voltage-gated ion channels
Family Family familyf.14.1.1 — Voltage-gated potassium channels
Domain ID domain_idd2a9he1
Class classg — Small proteins
Fold Fold foldg.3 — Knottins (small inhibitors, toxins, lectins)
Superfamily Superfamily superfamilyg.3.7 — Scorpion toxin-like
Family Family familyg.3.7.2 — Short-chain scorpion toxins

CATH v4.4 (4 domains)

Domain ID domain_id2a9hA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id2a9hB00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id2a9hC00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id2a9hD00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)