7v7w

Crystal Structure of the Heterodimeric HIF-3a:ARNT Complex with oleoylethanolamide (OEA)

Method: X-RAY DIFFRACTION Dmax: 104.6 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Aryl hydrocarbon receptor nuclear translocator

Mus musculus

UniProt P53762

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 82–464 Fragment:Hydrocarbon receptor nuclear translocator ARNT Hypoxia-inducible factor 3-alpha × 1 (Q0VBL6) 5YM (Z)-N-(2-hydroxyethyl)octadec-9-enamide × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5.5;289 K;Sodium citrate tribasic dihydrate, 2-Propanol, PEG 4000 Resolution 2.51 Å R-free 0.260

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 28 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ARNT_MOUSE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–359; UniProt 82–464

Hypoxia-inducible factor 3-alpha

Mus musculus

UniProt Q0VBL6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 4–358 Fragment:Hypoxia-inducible factor 3, HIF-3 Aryl hydrocarbon receptor nuclear translocator × 1 (P53762) 5YM (Z)-N-(2-hydroxyethyl)octadec-9-enamide × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5.5;289 K;Sodium citrate tribasic dihydrate, 2-Propanol, PEG 4000 Resolution 2.51 Å R-free 0.260

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HIF3A_MOUSE
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 2–356; UniProt 4–358

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7v7w

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7v7w
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7v7w
Deposition date deposition_date2021-08-21
Structure title titleCrystal Structure of the Heterodimeric HIF-3a:ARNT Complex with oleoylethanolamide (OEA)
Keywords keywordsHypoxia-inducible factor, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier29.15
Radius of gyration Rg (electron density) rg_electron28.57
Forward intensity I(0) i069145800.00
Molecular weight molecular_weight64678.0 kDa
Excluded volume excluded_volume80748 ų
Envelope volume envelope_volume102220 ų
Hydration-shell volume shell_volume31174 ų
Envelope diameter envelope_diameter109.6
Shell Rg shell_rg34.01
Envelope Rg envelope_rg28.79
Shape Rg shape_rg28.55
Total Rg total_rg29.14
Total atoms total_atoms4537
Residues n_residues567
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax104.6
Rg (real space) rg_real29.29
Rg uncertainty (real space) rg_real_error1.08
I(0) (real space) i0_real6.9150e+07
I(0) uncertainty (real space) i0_real_error1.0700e+06
Rg (reciprocal space) rg_reciprocal29.23
I(0) (reciprocal space) i0_reciprocal69140000.0000
Solution quality estimate total_estimate0.8405
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary31.0
Skewness Skewness skewness0.521
Kurtosis Kurtosis kurtosis-0.089
Angular range angular_range— – 0.2700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha20180000.0000
Real-space data points n_real_points55
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.710; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.899; Smooth: 0.894

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)