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8ay5

Human rhinovirus 2 empty particle in situ

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein VP1

OrganismNot specified

UniProt P04936

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 180 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1cqq 2hrv 2hrv 2xya 5fx5 5fx6 6ffn 6ffs

8 assemblies

Homodimer
7ara

1 assemblies

Homotetramer
1fpn 1fpn 3vdd 3vdd

4 assemblies

Other homooligomers
1fpn 1fpn 1fpn 1fpn 3tn9 3tn9 3tn9 3tn9 3tn9 3tn9 3vdd 3vdd

22 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
1a3r 1v9u 1v9u 1v9u 1v9u 1v9u 1v9u 3dpr 3dpr 3dpr 3dpr 3dpr

14 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name POLG_HRV2
Isoform —
PDB entities 1, 2, 3
Chains and sequence ranges Author chain A； PDBConstruct 1–251； UniProt 600–850 Author chain B； PDBConstruct 1–250； UniProt 81–330 Author chain C； PDBConstruct 1–237； UniProt 331–567

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8ay5
Deposition date deposition_date2022-09-01
Last revision last_revision2023-09-13
Structure title titleHuman rhinovirus 2 empty particle in situ
Keywords keywordsHuman rhinovirus 2, empty particle, in situ, cryo-EM., VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8ay5__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8ay5__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8ay5__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)134.70 Å
Total Rg134.80 Å
Atom count689940
Residues44280
Excluded volume6194100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8ay5__assembly_1__model_1 180-meric （180） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)