8cwo

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Method: ELECTRON MICROSCOPY

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1. Protein Identity and Related Structures Protein Identity & Related Structures

30S ribosomal protein S4

OrganismNot specified

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7JMY9_CUTAC
Isoform	—
PDB entities	2
Chains and sequence ranges	Author chain D； PDBConstruct 1–201； UniProt 1–201

30S ribosomal protein S5

OrganismNot specified

UniProt A0A2B7I5L8

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7I5L8_CUTAC
Isoform	—
PDB entities	3
Chains and sequence ranges	Author chain E； PDBConstruct 1–215； UniProt 1–215

30S ribosomal protein S6

OrganismNot specified

UniProt A0A2C6L3A1

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2C6L3A1_CUTAC
Isoform	—
PDB entities	4
Chains and sequence ranges	Author chain F； PDBConstruct 1–96； UniProt 1–96

30S ribosomal protein S8

OrganismNot specified

UniProt A0A2B7ITQ7

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7ITQ7_CUTAC
Isoform	—
PDB entities	5
Chains and sequence ranges	Author chain H； PDBConstruct 1–135； UniProt 1–135

30S ribosomal protein S11

OrganismNot specified

UniProt A0A2B7I645

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7I645_CUTAC
Isoform	—
PDB entities	6
Chains and sequence ranges	Author chain K； PDBConstruct 1–135； UniProt 1–135

30S ribosomal protein S12

OrganismNot specified

UniProt A0A2C6LJN0

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2C6LJN0_CUTAC
Isoform	—
PDB entities	7
Chains and sequence ranges	Author chain L； PDBConstruct 1–123； UniProt 1–123

30S ribosomal protein S15

OrganismNot specified

UniProt A0A2B7I743

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7I743_CUTAC
Isoform	—
PDB entities	8
Chains and sequence ranges	Author chain O； PDBConstruct 1–87； UniProt 1–87

30S ribosomal protein S17

OrganismNot specified

UniProt A0A2B7JMS7

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7JMS7_CUTAC
Isoform	—
PDB entities	9
Chains and sequence ranges	Author chain Q； PDBConstruct 1–90； UniProt 1–90

30S ribosomal protein S18

OrganismNot specified

UniProt A0A2C6LI71

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2C6LI71_CUTAC
Isoform	—
PDB entities	10
Chains and sequence ranges	Author chain R； PDBConstruct 1–79； UniProt 1–79

30S ribosomal protein S20

OrganismNot specified

UniProt A0A2B7I592

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7I592_CUTAC
Isoform	—
PDB entities	11
Chains and sequence ranges	Author chain T； PDBConstruct 1–88； UniProt 1–88

30S ribosomal protein S16

OrganismNot specified

UniProt A0A2B7IXM7

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein bS22 × 1 （A0A533INE0） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7IXM7_CUTAC
Isoform	—
PDB entities	12
Chains and sequence ranges	Author chain P； PDBConstruct 1–147； UniProt 1–147

30S ribosomal protein bS22

OrganismNot specified

UniProt A0A533INE0

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein S2 × 1 （A0A2B7I756） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A533INE0_CUTAC
Isoform	—
PDB entities	13
Chains and sequence ranges	Author chain X； PDBConstruct 1–33； UniProt 1–33

30S ribosomal protein S2

OrganismNot specified

UniProt A0A2B7I756

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Heteromer	Protein 13 RNA 2	16S ribosomal RNA × 1 30S ribosomal protein S4 × 1 （A0A2B7JMY9） 30S ribosomal protein S5 × 1 （A0A2B7I5L8） 30S ribosomal protein S6 × 1 （A0A2C6L3A1） 30S ribosomal protein S8 × 1 （A0A2B7ITQ7） 30S ribosomal protein S11 × 1 （A0A2B7I645） 30S ribosomal protein S12 × 1 （A0A2C6LJN0） 30S ribosomal protein S15 × 1 （A0A2B7I743） 30S ribosomal protein S17 × 1 （A0A2B7JMS7） 30S ribosomal protein S18 × 1 （A0A2C6LI71） 30S ribosomal protein S20 × 1 （A0A2B7I592） 30S ribosomal protein S16 × 1 （A0A2B7IXM7） 30S ribosomal protein bS22 × 1 （A0A533INE0） mRNA × 1 MAGNESIUM ION × 66 water × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2B7I756_CUTAC
Isoform	—
PDB entities	14
Chains and sequence ranges	Author chain B； PDBConstruct 1–283； UniProt 1–283

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	8cwo
Deposition date deposition_date	2022-05-19
Structure title title	Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map
Keywords keywords	ribosome, sarecycline, acne, ANTIBIOTIC; ANTIBIOTIC
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8cwo__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8cwo__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

8cwo__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	54.64 Å
Rg (electron density)	55.44 Å
Total Rg	55.46 Å
Atom count	34341
Residues	2542
Excluded volume	529110 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`8cwo__assembly_1__model_1`	pentadecameric （15）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (17)

Entity 1 Entity 1 polymer

Description description	16S ribosomal RNA
Molecular weight formula_weight	498742.9 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polyribonucleotide
Chain IDs strand_id	A
Atom count atom_count	34342

UUUUUCAUUGGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAACGGAAAGGCCCUGCUUUUGUGGGGUGCUCGAGUGGCGAACGGGUGAGUAACACGUGAGUAACCUGCCCUUGACUUUGGGAUAACUUCAGGAAACUGGGGCUAAUACCGGAUAGGAGCUCCUGCUGCAUGGUGGGGGUUGGAAAGUUUCGGCGGUUGGGGAUGGACUCGCGGCUUAUCAGCUUGUUGGUGGGGUAGUGGCUUACCAAGGCUUUGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACAUUGGGACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGGAAGCCUGAUGCAGCAACGCCGCGUGCGGGAUGACGGCCUUCGGGUUGUAAACCGCUUUCGCCUGUGACGAAGCGUGAGUGACGGUAAUGGGUAAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUGAUACGUAGGGUGCGAGCGUUGUCCGGAUUUAUUGGGCGUAAAGGGCUCGUAGGUGGUUGAUCGCGUCGGAAGUGUAAUCUUGGGGCUUAACCCUGAGCGUGCUUUCGAUACGGGUUGACUUGAGGAAGGUAGGGGAGAAUGGAAUUCCUGGUGGAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCAGUGGCGAAGGCGGUUCUCUGGGCCUUUCCUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGCUUAGAUACCCUGGUAGUCCACGCUGUAAACGGUGGGUACUAGGUGUGGGGUCCAUUCCACGGGUUCCGUGCCGUAGCUAACGCUUUAAGUACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGCCCCGCACAAGCGGCGGAGCAUGCGGAUUAAUUCGAUGCAACGCGUAGAACCUUACCUGGGUUUGACAUGGAUCGGGAGUGCUCAGAGAUGGGUGUGCCUCUUUUGGGGUCGGUUCACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUUCACUGUUGCCAGCACGUUAUGGUGGGGACUCAGUGGAGACCGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACGCAUGCUACAAUGGCUGGUACAGAGAGUGGCGAGCCUGUGAGGGUGAGCGAAUCUCGGAAAGCCGGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCUCAUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGGCUUGUACACACCGCCCGUCAAGUCAUGAAAGUUGGUAACACCCGAAGCCGGUGGCCUAACCGUUGUGGGGGAGCCGUCGAAGGUGGGACUGGUGAUUAGGACUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAUCACCUCCUUUCUAAGGAG

Entity 2 Entity 2 polymer

Description description	30S ribosomal protein S4
Molecular weight formula_weight	23271.6 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	D

MARYTGPLTKKSRRLGTDLVGNDKSFERRPYPPGVHGRGRTKDSEYSLQLREKQKARYAYGVLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGHFLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILVHQLPTRDQIVIDVNEQAIVELYSK

Entity 3 Entity 3 polymer

Description description	30S ribosomal protein S5
Molecular weight formula_weight	22603.7 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	E

MSGTQRRGGGAGGERRGRDNRRGQNDRNRNQNEYLERVVAINRVAKVVQGGRRFSFTALVVVGDGEGSVGVGYGKAKEVPAAIAKAVEEAKKHFFKVPLVGRTITHPVIGEKAAGVVMLRPASPGTGVIAGGSARAVLECAGVHDVLAKSLGSSNAINVVHATVDALQQLEEPEEVARRRGKSVEDIAPAAMLRARKEADEAAAAARMEEKAGVN

Entity 4 Entity 4 polymer

Description description	30S ribosomal protein S6
Molecular weight formula_weight	11270.1 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	F

MRKYEVMIIIDPTVEERQVDSLMEKYLKVITDEKGTVDNVDVWGKRRLAYDIQKKSEGIYVVVNATCEPATIQELDRLLAIDEKIMRTKVMRPEIH

Entity 5 Entity 5 polymer

Description description	30S ribosomal protein S8
Molecular weight formula_weight	14677.9 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	H

MTMTDPIADMLTRLRNANQAYHDQTSMPHSKIKAGIAGILKSEGYIADYKVNEPKEGEVGKTLTLTLKYGENRERSIAGVRRISKPGLRVYAKSTALPKVLGGLGIAIISTSQGLLTDKQAHEKSVGGEVLAYVW

Entity 6 Entity 6 polymer

Description description	30S ribosomal protein S11
Molecular weight formula_weight	14194.5 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	K

MATAGHKGAPKTKVRRKEKKNVVAGQAHIKSTFNNTIIAITDPSGAVISWASAGTVGFKGSRKSTPFAAQMAAEAAGRRAMEHGMKRVDVFVKGPGSGRETAIRSLGAVGLEIGPISDVTPVPHNGCRPPKRRRV

Entity 7 Entity 7 polymer

Description description	30S ribosomal protein S12
Molecular weight formula_weight	13666.1 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	L

MPTIQQLVRKGRTDKISKNKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLSSGIEVTAYIPGVGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGSLDTQGVKGRKQARSRYGAKKEK

Entity 8 Entity 8 polymer

Description description	30S ribosomal protein S15
Molecular weight formula_weight	10102.8 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	O

MDAAEKKKIIEEYATHPGDTGSPDVQVAILTKRIAELTEHLKVHKGDHHSRRGLMLMVGQRRRLLNYIAKNDIEHYRELIARLGLRR

Entity 9 Entity 9 polymer

Description description	30S ribosomal protein S17
Molecular weight formula_weight	10475.3 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	Q

MSENTAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDENNEAGMGDRVRIMETRPLSATKRWRLVEIIEKAK

Entity 10 Entity 10 polymer

Description description	30S ribosomal protein S18
Molecular weight formula_weight	8817.5 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	R

MAGPQRKSVNKKKVVPIKTVHIGAVDYKDTALLRKFISERGKIRARRVTGLSVQDQRKVAIAIKNARELALLPYASTAR

Entity 11 Entity 11 polymer

Description description	30S ribosomal protein S20
Molecular weight formula_weight	9724.3 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	T

MPNIKSQIKRVKTNEKSRQRNKAVKSALRTYVRNFRRAAEAGDVEAATKAARVANRQLDKAASKGVIHKNQAANRKSAISKKLNSLAA

Entity 12 Entity 12 polymer

Description description	30S ribosomal protein S16
Molecular weight formula_weight	15980.9 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	P

MATKIRLKRLGKIRTPHYRVVVMDSRAKRDGRAIEEIGQYHPKADPSVIVIDSERVQYWLGVGAQPTEAVVALLKRTGDWQKFTGDTSPSGVKPQPERPNKDDLFNAALAEADEAPREAITKKSEGAAADEASESAAGDNSGEKAEA

Entity 13 Entity 13 polymer

Description description	30S ribosomal protein bS22
Molecular weight formula_weight	4120.2 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	X

MGSVIKKRRKRMAKKKHRKLLKRTRIQRRRAGK

Entity 14 Entity 14 polymer

Description description	30S ribosomal protein S2
Molecular weight formula_weight	31583.2 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	B

MAVVTTRQLLESGVHFGHQTRRWNPKMKRFIFTERNGIYIIDLHQSLTYIDKAYAFVKETVAKGGQILFVGTKKQAQESIVEQATRVGMPYVNQRWLGGMLTNFQTISKRIARLKELEAMDFDKVSGSGLTKKELLMLSREKDKLEKDLGGIRDMPKVPQAVWVVDTKKEHLAIDEARKLKIPVVAILDTNCDPDEVDYAIPGNDDAIRSVSLLTRIIADAAAEGLMARSAGKSGEQPAEAEPMPDWERELLEGDGAKTEAKAEEPKAEAKKADEAPEAEKSN

Entity 15 Entity 15 polymer

Description description	mRNA
Molecular weight formula_weight	7115.3 kDa
Source method src_method	syn
Copy count entity_count	1

Polymer Polymer

Polymer type type	polyribonucleotide
Chain IDs strand_id	Y

CAAGGAGGUAAAAAUGUUUUAA

Entity 16 Entity 16 non-polymer

Description description	MAGNESIUM ION
Molecular weight formula_weight	24.3 kDa
Source method src_method	syn
Copy count entity_count	66

Entity 17 Entity 17 water

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	1

▼

6. Fold Classification (SCOP + CATH) 3 domains

CATH v4.4 (3 domains)

Domain ID domain_id	8cwoD01
Class class	3 — Alpha Beta
Architecture architecture	10 — Roll
Topology topology	290 — Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A
Homologous superfamily homologous superfamily	10 — RNA-binding S4 domain

Domain ID domain_id	8cwoF01
Class class	3 — Alpha Beta
Architecture architecture	30 — 2-Layer Sandwich
Topology topology	70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily	60 — Ribosomal protein S6/Translation elongation factor EF1B

Domain ID domain_id	8cwoH01
Class class	3 — Alpha Beta
Architecture architecture	30 — 2-Layer Sandwich
Topology topology	1370 — Ribosomal Protein S8; Chain: A, domain 1
Homologous superfamily homologous superfamily	30 —

▶

Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	2.84 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	70853

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

1. Protein Identity and Related Structures Protein Identity & Related Structures

30S ribosomal protein S4

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S5

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S6

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S8

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S11

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S12

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S15

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S17

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S18

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

30S ribosomal protein S20

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer