8d0k

Human CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template - PRIM2C advanced PIC

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

CST complex subunit CTC1

Homo sapiens

UniProt Q2NKJ3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 7 DNA 1 CST complex subunit STN1 × 1 (Q9H668) CST complex subunit TEN1 × 1 (Q86WV5) DNA primase small subunit × 1 (P49642) DNA primase large subunit × 1 (P49643) DNA polymerase alpha catalytic subunit × 1 (P09884) DNA polymerase alpha subunit B × 1 (Q14181) ;DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*A)-3') ; × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CTC1_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 31–1246; UniProt 2–1217

CST complex subunit STN1

Homo sapiens

UniProt Q9H668

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 7 DNA 1 CST complex subunit CTC1 × 1 (Q2NKJ3) CST complex subunit TEN1 × 1 (Q86WV5) DNA primase small subunit × 1 (P49642) DNA primase large subunit × 1 (P49643) DNA polymerase alpha catalytic subunit × 1 (P09884) DNA polymerase alpha subunit B × 1 (Q14181) ;DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*A)-3') ; × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name STN1_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 8–374; UniProt 2–368

CST complex subunit TEN1

Homo sapiens

UniProt Q86WV5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 7 DNA 1 CST complex subunit CTC1 × 1 (Q2NKJ3) CST complex subunit STN1 × 1 (Q9H668) DNA primase small subunit × 1 (P49642) DNA primase large subunit × 1 (P49643) DNA polymerase alpha catalytic subunit × 1 (P09884) DNA polymerase alpha subunit B × 1 (Q14181) ;DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*A)-3') ; × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TEN1L_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 32–152; UniProt 3–123

DNA primase small subunit

Homo sapiens

UniProt P49642

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 7 DNA 1 CST complex subunit CTC1 × 1 (Q2NKJ3) CST complex subunit STN1 × 1 (Q9H668) CST complex subunit TEN1 × 1 (Q86WV5) DNA primase large subunit × 1 (P49643) DNA polymerase alpha catalytic subunit × 1 (P09884) DNA polymerase alpha subunit B × 1 (Q14181) ;DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*A)-3') ; × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRI1_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 16–434; UniProt 2–420

DNA primase large subunit

Homo sapiens

UniProt P49643

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 7 DNA 1 CST complex subunit CTC1 × 1 (Q2NKJ3) CST complex subunit STN1 × 1 (Q9H668) CST complex subunit TEN1 × 1 (Q86WV5) DNA primase small subunit × 1 (P49642) DNA polymerase alpha catalytic subunit × 1 (P09884) DNA polymerase alpha subunit B × 1 (Q14181) ;DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*A)-3') ; × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRI2_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 16–523; UniProt 2–509

DNA polymerase alpha catalytic subunit

Homo sapiens

UniProt P09884

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 7 DNA 1 CST complex subunit CTC1 × 1 (Q2NKJ3) CST complex subunit STN1 × 1 (Q9H668) CST complex subunit TEN1 × 1 (Q86WV5) DNA primase small subunit × 1 (P49642) DNA primase large subunit × 1 (P49643) DNA polymerase alpha subunit B × 1 (Q14181) ;DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*A)-3') ; × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DPOLA_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 66–1526; UniProt 2–1462

DNA polymerase alpha subunit B

Homo sapiens

UniProt Q14181

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 7 DNA 1 CST complex subunit CTC1 × 1 (Q2NKJ3) CST complex subunit STN1 × 1 (Q9H668) CST complex subunit TEN1 × 1 (Q86WV5) DNA primase small subunit × 1 (P49642) DNA primase large subunit × 1 (P49643) DNA polymerase alpha catalytic subunit × 1 (P09884) ;DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*A)-3') ; × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DPOA2_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 16–612; UniProt 2–598

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id8d0k
Deposition date deposition_date2022-05-26
Structure title titleHuman CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template - PRIM2C advanced PIC
Keywords keywordstelomere, C-strand, complex, 4xTEL-foldback DNA template, PRIM2C, REPLICATION-DNA complex; REPLICATION/DNA
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8d0k__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8d0k__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8d0k__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)63.73 Å
Rg (electron density)64.14 Å
Total Rg64.04 Å
Atom count31011
Residues3840
Excluded volume553670 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8d0k__assembly_1__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (8)

▶

7. Citations (1)