8oiy

Crystal structure of the R15908H missense variant of titin domain Fn3-3

Method: X-RAY DIFFRACTION Dmax: 72.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Titin

Homo sapiens

UniProt Q8WZ42

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain A; UniProt 14217–14319 Chain B; UniProt 14217–14319 Chain C; UniProt 14217–14319 Chain D; UniProt 14217–14319 Chain E; UniProt 14217–14319 Chain F; UniProt 14217–14319 Mutation:R15908H No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;293 K;10mM Tris-HCl PH 7.5 NaCl 0.5mM DTT 0.1M sodium acetate pH 4.5 0.2M Lithium sulphate 50% v/v PEG 400 Resolution 2.10 Å R-free 0.257

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

54 other PDB entries and 123 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TITIN_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 4–106; UniProt 14217–14319 Author chain B; PDBConstruct 4–106; UniProt 14217–14319 Author chain C; PDBConstruct 4–106; UniProt 14217–14319 Author chain D; PDBConstruct 4–106; UniProt 14217–14319 Author chain E; PDBConstruct 4–106; UniProt 14217–14319 Author chain F; PDBConstruct 4–106; UniProt 14217–14319

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8oiy

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8oiy
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8oiy
Deposition date deposition_date2023-03-23
Structure title titleCrystal structure of the R15908H missense variant of titin domain Fn3-3
Keywords keywordsTitin Fibronectin type III A-band, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier25.10
Radius of gyration Rg (electron density) rg_electron23.78
Forward intensity I(0) i070000300.00
Molecular weight molecular_weight63888.0 kDa
Excluded volume excluded_volume79354 ų
Envelope volume envelope_volume98241 ų
Hydration-shell volume shell_volume33395 ų
Envelope diameter envelope_diameter74.6
Shell Rg shell_rg31.54
Envelope Rg envelope_rg23.33
Shape Rg shape_rg23.77
Total Rg total_rg24.69
Total atoms total_atoms8743
Residues n_residues606
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax72.8
Rg (real space) rg_real24.87
Rg uncertainty (real space) rg_real_error0.27
I(0) (real space) i0_real7.0000e+07
I(0) uncertainty (real space) i0_real_error8.2090e+05
Rg (reciprocal space) rg_reciprocal24.94
I(0) (reciprocal space) i0_reciprocal70000000.0000
Solution quality estimate total_estimate0.8995
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary71.6
Skewness Skewness skewness-0.084
Kurtosis Kurtosis kurtosis-0.571
Angular range angular_range— – 0.3150 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha12960000.0000
Real-space data points n_real_points64
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.926; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.964; Smooth: 0.949

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

8. Citations (1)

9. Files and Curves (10)