8ro9

Human cohesin SMC1A-HD(longCC-EQ)/RAD21-C complex - Open/closed P-loop conformation

Method: X-RAY DIFFRACTION Dmax: 134.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Structural maintenance of chromosomes protein 1A

Homo sapiens

UniProt Q14683

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–200 Chain A; UniProt 992–1233 Mutation:E1157Q 64-kDa C-terminal product × 1 (O60216) B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M sodium bromide; 0.1 M Bis-Tris propane pH 6.5; 20% w/v PEG 3350 Resolution 1.77 Å R-free 0.218
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 1–200 Chain C; UniProt 992–1233 Mutation:E1157Q 64-kDa C-terminal product × 1 (O60216) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M sodium bromide; 0.1 M Bis-Tris propane pH 6.5; 20% w/v PEG 3350 Resolution 1.77 Å R-free 0.218

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

12 other PDB entries and 13 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name SMC1A_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–200; UniProt 1–200 Author chain A; PDBConstruct 215–456; UniProt 992–1233 Author chain C; PDBConstruct 1–200; UniProt 1–200 Author chain C; PDBConstruct 215–456; UniProt 992–1233

64-kDa C-terminal product

Homo sapiens

UniProt O60216

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 558–629 Not recorded Structural maintenance of chromosomes protein 1A × 1 (Q14683) B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M sodium bromide; 0.1 M Bis-Tris propane pH 6.5; 20% w/v PEG 3350 Resolution 1.77 Å R-free 0.218
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 558–629 Not recorded Structural maintenance of chromosomes protein 1A × 1 (Q14683) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M sodium bromide; 0.1 M Bis-Tris propane pH 6.5; 20% w/v PEG 3350 Resolution 1.77 Å R-free 0.218

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

35 other PDB entries and 40 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RAD21_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 2–73; UniProt 558–629 Author chain D; PDBConstruct 2–73; UniProt 558–629

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8ro9

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8ro9
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8ro9
Deposition date deposition_date2024-01-11
Structure title titleHuman cohesin SMC1A-HD(longCC-EQ)/RAD21-C complex - Open/closed P-loop conformation
Keywords keywords3D genome organization, Chromatin, Cohesin, ATPase activity, ATPase cycle, NUCLEAR PROTEIN; NUCLEAR PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier34.90
Radius of gyration Rg (electron density) rg_electron34.39
Forward intensity I(0) i0123008000.00
Molecular weight molecular_weight90718.0 kDa
Excluded volume excluded_volume114540 ų
Envelope volume envelope_volume150000 ų
Hydration-shell volume shell_volume37739 ų
Envelope diameter envelope_diameter143.4
Shell Rg shell_rg39.08
Envelope Rg envelope_rg34.61
Shape Rg shape_rg34.37
Total Rg total_rg34.81
Total atoms total_atoms6398
Residues n_residues809
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax134.4
Rg (real space) rg_real35.06
Rg uncertainty (real space) rg_real_error1.62
I(0) (real space) i0_real1.2300e+08
I(0) uncertainty (real space) i0_real_error2.1430e+06
Rg (reciprocal space) rg_reciprocal34.96
I(0) (reciprocal space) i0_reciprocal123000000.0000
Solution quality estimate total_estimate0.8189
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary38.8
Skewness Skewness skewness0.500
Kurtosis Kurtosis kurtosis0.006
Angular range angular_range— – 0.2250 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha16840000.0000
Real-space data points n_real_points46
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.627; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.785; Smooth: 0.974

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)