8z5s

Cryo-EM structure of the proximal rod-export apparatus of the polar flagellar motor

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Flagellar biosynthetic protein FliP

OrganismNot specified

UniProt A0A1W6TTE6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliQ × 4 (A0A0H0YAF4) Flagellar basal-body rod protein FlgF × 5 (A0A0G9M4M9) Flagellar hook-basal body complex protein FliE × 6 (A0A0H0Y9C1) Flagellar biosynthetic protein FlhB × 1 (A0A0H0YB55) Flagellar biosynthetic protein FliR × 1 (A0A0H0YFV7) Flagellar M-ring protein × 15 (Q75N27) Flagellar basal body rod protein FlgB × 5 (A0A0G9LZG6) Flagellar basal-body rod protein FlgC × 6 (A0A0G9LZH2) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A1W6TTE6_VIBAL
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1; PDBConstruct 1–289; UniProt 1–289 Author chain 2; PDBConstruct 1–289; UniProt 1–289 Author chain 3; PDBConstruct 1–289; UniProt 1–289 Author chain y; PDBConstruct 1–289; UniProt 1–289 Author chain z; PDBConstruct 1–289; UniProt 1–289

Flagellar biosynthetic protein FliQ

OrganismNot specified

UniProt A0A0H0YAF4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliP × 5 (A0A1W6TTE6) Flagellar basal-body rod protein FlgF × 5 (A0A0G9M4M9) Flagellar hook-basal body complex protein FliE × 6 (A0A0H0Y9C1) Flagellar biosynthetic protein FlhB × 1 (A0A0H0YB55) Flagellar biosynthetic protein FliR × 1 (A0A0H0YFV7) Flagellar M-ring protein × 15 (Q75N27) Flagellar basal body rod protein FlgB × 5 (A0A0G9LZG6) Flagellar basal-body rod protein FlgC × 6 (A0A0G9LZH2) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0H0YAF4_VIBAL
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 4; PDBConstruct 1–89; UniProt 1–89 Author chain 5; PDBConstruct 1–89; UniProt 1–89 Author chain 6; PDBConstruct 1–89; UniProt 1–89 Author chain 7; PDBConstruct 1–89; UniProt 1–89

Flagellar basal-body rod protein FlgF

OrganismNot specified

UniProt A0A0G9M4M9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliP × 5 (A0A1W6TTE6) Flagellar biosynthetic protein FliQ × 4 (A0A0H0YAF4) Flagellar hook-basal body complex protein FliE × 6 (A0A0H0Y9C1) Flagellar biosynthetic protein FlhB × 1 (A0A0H0YB55) Flagellar biosynthetic protein FliR × 1 (A0A0H0YFV7) Flagellar M-ring protein × 15 (Q75N27) Flagellar basal body rod protein FlgB × 5 (A0A0G9LZG6) Flagellar basal-body rod protein FlgC × 6 (A0A0G9LZH2) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0G9M4M9_VIBAL
Isoform —
PDB entities 3
Chains and sequence ranges Author chain m; PDBConstruct 1–249; UniProt 1–249 Author chain n; PDBConstruct 1–249; UniProt 1–249 Author chain o; PDBConstruct 1–249; UniProt 1–249 Author chain p; PDBConstruct 1–249; UniProt 1–249 Author chain q; PDBConstruct 1–249; UniProt 1–249

Flagellar hook-basal body complex protein FliE

OrganismNot specified

UniProt A0A0H0Y9C1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliP × 5 (A0A1W6TTE6) Flagellar biosynthetic protein FliQ × 4 (A0A0H0YAF4) Flagellar basal-body rod protein FlgF × 5 (A0A0G9M4M9) Flagellar biosynthetic protein FlhB × 1 (A0A0H0YB55) Flagellar biosynthetic protein FliR × 1 (A0A0H0YFV7) Flagellar M-ring protein × 15 (Q75N27) Flagellar basal body rod protein FlgB × 5 (A0A0G9LZG6) Flagellar basal-body rod protein FlgC × 6 (A0A0G9LZH2) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0H0Y9C1_VIBAL
Isoform —
PDB entities 4
Chains and sequence ranges Author chain r; PDBConstruct 1–103; UniProt 1–103 Author chain s; PDBConstruct 1–103; UniProt 1–103 Author chain t; PDBConstruct 1–103; UniProt 1–103 Author chain u; PDBConstruct 1–103; UniProt 1–103 Author chain v; PDBConstruct 1–103; UniProt 1–103 Author chain w; PDBConstruct 1–103; UniProt 1–103

Flagellar biosynthetic protein FlhB

OrganismNot specified

UniProt A0A0H0YB55

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliP × 5 (A0A1W6TTE6) Flagellar biosynthetic protein FliQ × 4 (A0A0H0YAF4) Flagellar basal-body rod protein FlgF × 5 (A0A0G9M4M9) Flagellar hook-basal body complex protein FliE × 6 (A0A0H0Y9C1) Flagellar biosynthetic protein FliR × 1 (A0A0H0YFV7) Flagellar M-ring protein × 15 (Q75N27) Flagellar basal body rod protein FlgB × 5 (A0A0G9LZG6) Flagellar basal-body rod protein FlgC × 6 (A0A0G9LZH2) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0H0YB55_VIBAL
Isoform —
PDB entities 5
Chains and sequence ranges Author chain x; PDBConstruct 1–376; UniProt 1–376

Flagellar biosynthetic protein FliR

OrganismNot specified

UniProt A0A0H0YFV7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliP × 5 (A0A1W6TTE6) Flagellar biosynthetic protein FliQ × 4 (A0A0H0YAF4) Flagellar basal-body rod protein FlgF × 5 (A0A0G9M4M9) Flagellar hook-basal body complex protein FliE × 6 (A0A0H0Y9C1) Flagellar biosynthetic protein FlhB × 1 (A0A0H0YB55) Flagellar M-ring protein × 15 (Q75N27) Flagellar basal body rod protein FlgB × 5 (A0A0G9LZG6) Flagellar basal-body rod protein FlgC × 6 (A0A0G9LZH2) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0H0YFV7_VIBAL
Isoform —
PDB entities 6
Chains and sequence ranges Author chain 8; PDBConstruct 1–260; UniProt 1–260

Flagellar M-ring protein

OrganismNot specified

UniProt Q75N27

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliP × 5 (A0A1W6TTE6) Flagellar biosynthetic protein FliQ × 4 (A0A0H0YAF4) Flagellar basal-body rod protein FlgF × 5 (A0A0G9M4M9) Flagellar hook-basal body complex protein FliE × 6 (A0A0H0Y9C1) Flagellar biosynthetic protein FlhB × 1 (A0A0H0YB55) Flagellar biosynthetic protein FliR × 1 (A0A0H0YFV7) Flagellar basal body rod protein FlgB × 5 (A0A0G9LZG6) Flagellar basal-body rod protein FlgC × 6 (A0A0G9LZH2) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q75N27_VIBAL
Isoform —
PDB entities 7
Chains and sequence ranges Author chain AA; PDBConstruct 1–580; UniProt 1–580 Author chain AB; PDBConstruct 1–580; UniProt 1–580 Author chain AC; PDBConstruct 1–580; UniProt 1–580 Author chain AD; PDBConstruct 1–580; UniProt 1–580 Author chain AE; PDBConstruct 1–580; UniProt 1–580 Author chain AF; PDBConstruct 1–580; UniProt 1–580 Author chain AG; PDBConstruct 1–580; UniProt 1–580 Author chain AH; PDBConstruct 1–580; UniProt 1–580 Author chain AI; PDBConstruct 1–580; UniProt 1–580 Author chain AJ; PDBConstruct 1–580; UniProt 1–580 Author chain AK; PDBConstruct 1–580; UniProt 1–580 Author chain AL; PDBConstruct 1–580; UniProt 1–580 Author chain AM; PDBConstruct 1–580; UniProt 1–580 Author chain AN; PDBConstruct 1–580; UniProt 1–580 Author chain AO; PDBConstruct 1–580; UniProt 1–580

Flagellar basal body rod protein FlgB

OrganismNot specified

UniProt A0A0G9LZG6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliP × 5 (A0A1W6TTE6) Flagellar biosynthetic protein FliQ × 4 (A0A0H0YAF4) Flagellar basal-body rod protein FlgF × 5 (A0A0G9M4M9) Flagellar hook-basal body complex protein FliE × 6 (A0A0H0Y9C1) Flagellar biosynthetic protein FlhB × 1 (A0A0H0YB55) Flagellar biosynthetic protein FliR × 1 (A0A0H0YFV7) Flagellar M-ring protein × 15 (Q75N27) Flagellar basal-body rod protein FlgC × 6 (A0A0G9LZH2) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0G9LZG6_VIBAL
Isoform —
PDB entities 8
Chains and sequence ranges Author chain b; PDBConstruct 1–131; UniProt 1–131 Author chain c; PDBConstruct 1–131; UniProt 1–131 Author chain d; PDBConstruct 1–131; UniProt 1–131 Author chain e; PDBConstruct 1–131; UniProt 1–131 Author chain f; PDBConstruct 1–131; UniProt 1–131

Flagellar basal-body rod protein FlgC

OrganismNot specified

UniProt A0A0G9LZH2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 48 Flagellar biosynthetic protein FliP × 5 (A0A1W6TTE6) Flagellar biosynthetic protein FliQ × 4 (A0A0H0YAF4) Flagellar basal-body rod protein FlgF × 5 (A0A0G9M4M9) Flagellar hook-basal body complex protein FliE × 6 (A0A0H0Y9C1) Flagellar biosynthetic protein FlhB × 1 (A0A0H0YB55) Flagellar biosynthetic protein FliR × 1 (A0A0H0YFV7) Flagellar M-ring protein × 15 (Q75N27) Flagellar basal body rod protein FlgB × 5 (A0A0G9LZG6) (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 4 (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0G9LZH2_VIBAL
Isoform —
PDB entities 9
Chains and sequence ranges Author chain g; PDBConstruct 1–137; UniProt 1–137 Author chain h; PDBConstruct 1–137; UniProt 1–137 Author chain i; PDBConstruct 1–137; UniProt 1–137 Author chain j; PDBConstruct 1–137; UniProt 1–137 Author chain k; PDBConstruct 1–137; UniProt 1–137 Author chain l; PDBConstruct 1–137; UniProt 1–137

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8z5s
Deposition date deposition_date2024-04-18
Structure title titleCryo-EM structure of the proximal rod-export apparatus of the polar flagellar motor
Keywords keywordsPolar flagellum, Polar flagellar motor, Proximal rod, MOTOR PROTEIN; MOTOR PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8z5s__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8z5s__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8z5s__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)63.80 Å
Rg (electron density)65.43 Å
Total Rg65.22 Å
Atom count38700
Residues5016
Excluded volume696060 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8z5s__assembly_1__model_1 48-meric (48) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (11)

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7. Citations (1)