9dyg

iSAT-PNA-RA20, RA20-B-c class

Method: ELECTRON MICROSCOPY
▼

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Large ribosomal subunit protein bL34

物种未注明

UniProt P0A7P5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL34_ECOLI
Isoform —
PDB实体 2
链与序列区间 作者链 2; PDB构建体 1–37; UniProt 9–45

Large ribosomal subunit protein uL3

物种未注明

UniProt P60438

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL3_ECOLI
Isoform —
PDB实体 3
链与序列区间 作者链 D; PDB构建体 1–204; UniProt 6–209

Large ribosomal subunit protein uL4

物种未注明

UniProt P60723

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL4_ECOLI
Isoform —
PDB实体 4
链与序列区间 作者链 E; PDB构建体 1–201; UniProt 1–201

Large ribosomal subunit protein uL13

物种未注明

UniProt P0AA12

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL13_ECO57
Isoform —
PDB实体 5
链与序列区间 作者链 J; PDB构建体 1–142; UniProt 1–142

Large ribosomal subunit protein uL14

物种未注明

UniProt P0ADY3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL14_ECOLI
Isoform —
PDB实体 6
链与序列区间 作者链 K; PDB构建体 1–110; UniProt 9–118

Large ribosomal subunit protein bL17

物种未注明

UniProt P0AG44

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL17_ECOLI
Isoform —
PDB实体 7
链与序列区间 作者链 N; PDB构建体 1–120; UniProt 1–120

Large ribosomal subunit protein bL19

物种未注明

UniProt P0A7K6

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL19_ECOLI
Isoform —
PDB实体 8
链与序列区间 作者链 P; PDB构建体 1–113; UniProt 3–115

Large ribosomal subunit protein bL20

物种未注明

UniProt C3T7Q7

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 C3T7Q7_ECOLX
Isoform —
PDB实体 9
链与序列区间 作者链 Q; PDB构建体 1–117; UniProt 2–118

Large ribosomal subunit protein bL21

物种未注明

UniProt C3SSG2

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 C3SSG2_ECOLX
Isoform —
PDB实体 10
链与序列区间 作者链 R; PDB构建体 1–103; UniProt 1–103

Large ribosomal subunit protein uL22

物种未注明

UniProt P61175

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL22_ECOLI
Isoform —
PDB实体 11
链与序列区间 作者链 S; PDB构建体 1–110; UniProt 1–110

Large ribosomal subunit protein uL23

物种未注明

UniProt P0ADZ0

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RL23_ECOLI
Isoform —
PDB实体 12
链与序列区间 作者链 T; PDB构建体 1–93; UniProt 1–93

Large ribosomal subunit protein uL24

物种未注明

UniProt A0A7U9LWC1

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL29 × 1 (C3SQY2) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A7U9LWC1_ECOLX
Isoform —
PDB实体 13
链与序列区间 作者链 U; PDB构建体 1–102; UniProt 2–103

Large ribosomal subunit protein uL29

物种未注明

UniProt C3SQY2

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 C3SQY2_ECOLX
Isoform —
PDB实体 14
链与序列区间 作者链 Y; PDB构建体 1–63; UniProt 1–63

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

▼

2. 结构基本信息 2. Structure Basics

条目编号 entry_id9dyg
沉积日期 deposition_date2024-10-14
最后修订 last_revision2024-11-13
结构标题 titleiSAT-PNA-RA20, RA20-B-c class
关键词 keywords50S subunit, assembly intermediate, RNA-protein complex, ribosome; RIBOSOME
实验方法 methodELECTRON MICROSCOPY
▼

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

9dyg__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

9dyg__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

9dyg__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)69.42 Å
Rg(电子密度)69.29 Å
总 Rg69.32 Å
原子数42760
残基数3069
排除体积601010 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 9dyg__assembly_1__model_1 tetradecameric (14) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
▶

4. 晶体学与实验 4. Crystallography & Experiment

▶

5. 实体与聚合物信息 Entities & Polymers (14)

▶

7. 引用文献 (1)