9dyg

iSAT-PNA-RA20, RA20-B-c class

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Large ribosomal subunit protein bL34

OrganismNot specified

UniProt P0A7P5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL34_ECOLI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 2; PDBConstruct 1–37; UniProt 9–45

Large ribosomal subunit protein uL3

OrganismNot specified

UniProt P60438

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL3_ECOLI
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 1–204; UniProt 6–209

Large ribosomal subunit protein uL4

OrganismNot specified

UniProt P60723

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL4_ECOLI
Isoform —
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–201; UniProt 1–201

Large ribosomal subunit protein uL13

OrganismNot specified

UniProt P0AA12

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL13_ECO57
Isoform —
PDB entities 5
Chains and sequence ranges Author chain J; PDBConstruct 1–142; UniProt 1–142

Large ribosomal subunit protein uL14

OrganismNot specified

UniProt P0ADY3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL14_ECOLI
Isoform —
PDB entities 6
Chains and sequence ranges Author chain K; PDBConstruct 1–110; UniProt 9–118

Large ribosomal subunit protein bL17

OrganismNot specified

UniProt P0AG44

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL17_ECOLI
Isoform —
PDB entities 7
Chains and sequence ranges Author chain N; PDBConstruct 1–120; UniProt 1–120

Large ribosomal subunit protein bL19

OrganismNot specified

UniProt P0A7K6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL19_ECOLI
Isoform —
PDB entities 8
Chains and sequence ranges Author chain P; PDBConstruct 1–113; UniProt 3–115

Large ribosomal subunit protein bL20

OrganismNot specified

UniProt C3T7Q7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name C3T7Q7_ECOLX
Isoform —
PDB entities 9
Chains and sequence ranges Author chain Q; PDBConstruct 1–117; UniProt 2–118

Large ribosomal subunit protein bL21

OrganismNot specified

UniProt C3SSG2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name C3SSG2_ECOLX
Isoform —
PDB entities 10
Chains and sequence ranges Author chain R; PDBConstruct 1–103; UniProt 1–103

Large ribosomal subunit protein uL22

OrganismNot specified

UniProt P61175

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL22_ECOLI
Isoform —
PDB entities 11
Chains and sequence ranges Author chain S; PDBConstruct 1–110; UniProt 1–110

Large ribosomal subunit protein uL23

OrganismNot specified

UniProt P0ADZ0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL23_ECOLI
Isoform —
PDB entities 12
Chains and sequence ranges Author chain T; PDBConstruct 1–93; UniProt 1–93

Large ribosomal subunit protein uL24

OrganismNot specified

UniProt A0A7U9LWC1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL29 × 1 (C3SQY2) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A7U9LWC1_ECOLX
Isoform —
PDB entities 13
Chains and sequence ranges Author chain U; PDBConstruct 1–102; UniProt 2–103

Large ribosomal subunit protein uL29

OrganismNot specified

UniProt C3SQY2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 23S rRNA × 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA12) Large ribosomal subunit protein uL14 × 1 (P0ADY3) Large ribosomal subunit protein bL17 × 1 (P0AG44) Large ribosomal subunit protein bL19 × 1 (P0A7K6) Large ribosomal subunit protein bL20 × 1 (C3T7Q7) Large ribosomal subunit protein bL21 × 1 (C3SSG2) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (A0A7U9LWC1) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name C3SQY2_ECOLX
Isoform —
PDB entities 14
Chains and sequence ranges Author chain Y; PDBConstruct 1–63; UniProt 1–63

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9dyg
Deposition date deposition_date2024-10-14
Last revision last_revision2024-11-13
Structure title titleiSAT-PNA-RA20, RA20-B-c class
Keywords keywords50S subunit, assembly intermediate, RNA-protein complex, ribosome; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9dyg__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9dyg__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9dyg__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)69.42 Å
Rg (electron density)69.29 Å
Total Rg69.32 Å
Atom count42760
Residues3069
Excluded volume601010 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9dyg__assembly_1__model_1 tetradecameric (14) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (14)

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7. Citations (1)