9h45

Crystal Structure of Hfq V22A

Method: X-RAY DIFFRACTION Dmax: 70.7 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

RNA-binding protein Hfq

Escherichia coli (strain K12)

UniProt P0A6X3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Homooligomer Protein × 6 RNA 1 PDB declaration: heptameric(7) Consistent with all polymer counts Chain A; UniProt 1–102 Chain B; UniProt 1–102 Chain C; UniProt 1–102 Chain D; UniProt 1–102 Chain E; UniProt 1–102 Chain F; UniProt 1–102 Not recorded ;RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') ; × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5;293 K;15 %v/v PEGSH 0.15 M NH4 Acet 0.1 M Na3 Cit Resolution 2.08 Å R-free 0.323

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

14 other PDB entries and 18 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HFQ_ECOLI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–102; UniProt 1–102 Author chain B; PDBConstruct 1–102; UniProt 1–102 Author chain C; PDBConstruct 1–102; UniProt 1–102 Author chain D; PDBConstruct 1–102; UniProt 1–102 Author chain E; PDBConstruct 1–102; UniProt 1–102 Author chain F; PDBConstruct 1–102; UniProt 1–102

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9h45

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9h45
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9h45
Deposition date deposition_date2024-10-17
最后修订 last_revision2025-02-05
Structure title titleCrystal Structure of Hfq V22A
Keywords keywordsRNA-chaperone, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.10
Radius of gyration Rg (electron density) rg_electron22.06
Forward intensity I(0) i042612600.00
Molecular weight molecular_weight48803.0 kDa
Excluded volume excluded_volume60318 ų
Envelope volume envelope_volume71637 ų
Hydration-shell volume shell_volume26465 ų
Envelope diameter envelope_diameter70.2
Shell Rg shell_rg29.44
Envelope Rg envelope_rg21.97
Shape Rg shape_rg22.05
Total Rg total_rg22.90
Total atoms total_atoms3421
Residues n_residues397
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax70.7
Rg (real space) rg_real22.96
Rg uncertainty (real space) rg_real_error0.37
I(0) (real space) i0_real4.2610e+07
I(0) uncertainty (real space) i0_real_error5.0550e+05
Rg (reciprocal space) rg_reciprocal22.99
I(0) (reciprocal space) i0_reciprocal42610000.0000
Solution quality estimate total_estimate0.9028
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary69.6
Skewness Skewness skewness0.139
Kurtosis Kurtosis kurtosis-0.508
Angular range angular_range— – 0.3450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha9954000.0000
Real-space data points n_real_points66
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.936; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.935

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)