Structure of Alpha Appendage of AP2 bound to the extended FxDxF motif derived of CCDC32

entry_id	9ppp
deposition_date	2025-07-21
title	Structure of Alpha Appendage of AP2 bound to the extended FxDxF motif derived of CCDC32
keywords	Clathin, AP-2 adaptor complex, assembly chaperone, ENDOCYTOSIS; ENDOCYTOSIS
method	X-RAY DIFFRACTION

rg_guinier	32.62 Å
rg_electron	32.07 Å
i0	58349800.00
molecular_weight	60657.0 kDa
excluded_volume	75958 ų
envelope_volume	97099 ų
shell_volume	27475 ų
envelope_diameter	112.5 Å
shell_rg	35.99 Å
envelope_rg	31.56 Å
shape_rg	32.05 Å
total_rg	32.49 Å
total_atoms	4264
n_residues	534
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	111.8 Å
rg_real	33.05 Å
rg_real_error	1.14 Å
i0_real	5.8350e+07
i0_real_error	1.0410e+06
rg_reciprocal	32.87 Å
i0_reciprocal	58340000.0000
total_estimate	0.8107
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.4 Å
skewness	0.509
kurtosis	-0.501
angular_range	— – 0.2450 Å−1
current_alpha	0.0000
highest_alpha	10240000.0000
n_real_points	50
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.727; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.587; Smooth: 0.765

Unit Cell

length_a	96.664 Å
length_b	96.664 Å
length_c	195.231 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	18

Symmetry

space_group	H 3
int_tables_number	146
crystal_system	trigonal

Refinement

resolution	2.100 Å
resolution_low	23.430 Å
r_factor	0.1700
r_work	0.1681
r_free	0.2049

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/pp/9ppp/pr_distribution.json
• pr_output /app/data/pr_computation/pp/9ppp/9ppp.pr.out
• pr_plot /app/data/visualization/pr_computation/pp/9ppp/9ppp_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/pp/9ppp/9ppp.dat
• saxs_fit /app/data/saxs_computation/pp/9ppp/9ppp.fit
• saxs_log /app/data/saxs_computation/pp/9ppp/9ppp.log
• saxs_plot /app/data/visualization/saxs_computation/pp/9ppp/9ppp_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/pp/9ppp/9ppp.fit
pddf	/app/data/pr_computation/pp/9ppp/9ppp.pr.out
profile	/app/data/saxs_computation/pp/9ppp/9ppp.dat