Structure of Alpha Appendage of AP2 bound to the FxDxF motif derived of CCDC32

entry_id	9pue
deposition_date	2025-07-30
last_revision	2026-04-08
title	Structure of Alpha Appendage of AP2 bound to the FxDxF motif derived of CCDC32
keywords	Clathin, AP-2 adaptor complex, assembly chaperone, ENDOCYTOSIS; ENDOCYTOSIS
method	X-RAY DIFFRACTION

rg_guinier	21.37 Å
rg_electron	20.40 Å
i0	14178600.00
molecular_weight	28499.0 kDa
excluded_volume	35761 ų
envelope_volume	41829 ų
shell_volume	18012 ų
envelope_diameter	72.5 Å
shell_rg	26.11 Å
envelope_rg	20.72 Å
shape_rg	20.42 Å
total_rg	21.18 Å
total_atoms	2006
n_residues	253
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	72.4 Å
rg_real	21.48 Å
rg_real_error	0.72 Å
i0_real	1.4180e+07
i0_real_error	2.1540e+05
rg_reciprocal	21.46 Å
i0_reciprocal	14180000.0000
total_estimate	0.8622
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	21.3 Å
skewness	0.498
kurtosis	-0.206
angular_range	— – 0.3700 Å−1
current_alpha	0.0000
highest_alpha	3480000.0000
n_real_points	69
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.773; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.904; Smooth: 0.983

Unit Cell

length_a	40.807 Å
length_b	72.465 Å
length_c	42.053 Å
angle_alpha	90.00 °
angle_beta	99.09 °
angle_gamma	90.00 °
z_pdb	2

Symmetry

space_group	P 1 21 1
int_tables_number	4
crystal_system	monoclinic

Refinement

resolution	1.910 Å
resolution_low	20.880 Å
r_factor	0.1872
r_work	0.1823
r_free	0.2302

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/pu/9pue/pr_distribution.json
• pr_output /app/data/pr_computation/pu/9pue/9pue.pr.out
• pr_plot /app/data/visualization/pr_computation/pu/9pue/9pue_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/pu/9pue/9pue.dat
• saxs_fit /app/data/saxs_computation/pu/9pue/9pue.fit
• saxs_log /app/data/saxs_computation/pu/9pue/9pue.log
• saxs_plot /app/data/visualization/saxs_computation/pu/9pue/9pue_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/pu/9pue/9pue.fit
pddf	/app/data/pr_computation/pu/9pue/9pue.pr.out
profile	/app/data/saxs_computation/pu/9pue/9pue.dat