9qdx
GID4 in complex with Compound 1
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qdx |
| deposition_date | 2025-03-07 |
| last_revision | 2026-03-18 |
| title | GID4 in complex with Compound 1 |
| keywords | Ligase, TPD, ubiquitination; LIGASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.83 Å |
| rg_electron | 15.75 Å |
| i0 | 12089100.00 |
| molecular_weight | 17875.0 kDa |
| excluded_volume | 17576 ų |
| envelope_volume | 27603 ų |
| shell_volume | 14774 ų |
| envelope_diameter | 58.5 Å |
| shell_rg | 21.67 Å |
| envelope_rg | 16.24 Å |
| shape_rg | 15.71 Å |
| total_rg | 16.65 Å |
| total_atoms | 1363 |
| n_residues | 161 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 59.5 Å |
| rg_real | 16.77 Å |
| rg_real_error | 0.33 Å |
| i0_real | 1.2090e+07 |
| i0_real_error | 1.4470e+05 |
| rg_reciprocal | 16.78 Å |
| i0_reciprocal | 12090000.0000 |
| total_estimate | 0.8435 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 20.9 Å |
| skewness | 0.322 |
| kurtosis | -0.086 |
| angular_range | — – 0.4750 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2530000.0000 |
| n_real_points | 78 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.656; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 1.000 |