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9qms

DNA-PK bound to 153 bp H2AX nucleosome with ATPyS

Method: ELECTRON MICROSCOPY Dmax: 381.7 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9qms

P(r) Distribution

P(r) distribution for 9qms
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1. Structure Basics

entry_id9qms
deposition_date2025-03-24
titleDNA-PK bound to 153 bp H2AX nucleosome with ATPyS
keywordsDNA-binding protein, NHEJ, Ku70/80, nucleosome, DNA BINDING PROTEIN; DNA BINDING PROTEIN
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier— Å
rg_electron145.30 Å
i039092600000.00
molecular_weight1620900.0 kDa
excluded_volume1998600 ų
envelope_volume4113900 ų
shell_volume250780 ų
envelope_diameter489.6 Å
shell_rg122.40 Å
envelope_rg138.40 Å
shape_rg145.20 Å
total_rg145.40 Å
total_atoms113260
n_residues13324
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax381.7 Å
rg_real138.90 Å
rg_real_error2.04 Å
i0_real3.7450e+10
i0_real_error9.9680e+08
rg_reciprocal119.10 Å
i0_reciprocal35030000000.0000
total_estimate0.9155
solution_quality EXCELLENT a EXCELLENT solution
n_peaks2
r_peak_primary208.2 Å
skewness0.172
kurtosis-0.964
angular_range— – 0.0550 Å−1
current_alpha0.8147
highest_alpha613400000.0000
n_real_points12
gnom_version4.1.3
quality_criteria AN1: 0.007; Oscil: 0.992; Stabil: 0.977; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.000
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4. Crystallography & Experiment

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5. Entities & Polymer Info (9)

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6. Citations (1)

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7. Files & Curves (10)