1jeq

Crystal Structure of the Ku Heterodimer

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

KU70

Homo sapiens

UniProt P12956

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 KU80 × 1 (P13010) water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name KU70_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–609; UniProt 0–608

KU80

Homo sapiens

UniProt P13010

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 KU70 × 1 (P12956) water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name KU86_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–565; UniProt 0–564

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1jeq
Deposition date deposition_date2001-06-18
Structure title titleCrystal Structure of the Ku Heterodimer
Keywords keywords;double-strand DNA break repair, non-homologous end-joining, alpha/beta domain, beta barrel, helical C-terminal arm, sap domain, DNA BINDING PROTEIN ;; DNA BINDING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1jeq__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1jeq__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1jeq__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)36.24 Å
Rg (electron density)35.43 Å
Total Rg35.90 Å
Atom count8591
Residues1068
Excluded volume154550 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1jeq__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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6. Fold Classification (SCOP + CATH) 13 domains

SCOP 2.08 (5 domains)

Domain ID domain_idd1jeqa1
Class classa — All alpha proteins
Fold Fold folda.140 — LEM/SAP HeH motif
Superfamily Superfamily superfamilya.140.2 — SAP domain
Family Family familya.140.2.1 — SAP domain
Domain ID domain_idd1jeqa3
Class classb — All beta proteins
Fold Fold foldb.131 — SPOC domain-like
Superfamily Superfamily superfamilyb.131.1 — SPOC domain-like
Family Family familyb.131.1.1 — Ku70 subunit middle domain
Domain ID domain_idd1jeqa4
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.62 — vWA-like
Superfamily Superfamily superfamilyc.62.1 — vWA-like
Family Family familyc.62.1.3 — Ku70 subunit N-terminal domain
Domain ID domain_idd1jeqb1
Class classb — All beta proteins
Fold Fold foldb.131 — SPOC domain-like
Superfamily Superfamily superfamilyb.131.1 — SPOC domain-like
Family Family familyb.131.1.2 — Ku80 subunit middle domain
Domain ID domain_idd1jeqb2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.62 — vWA-like
Superfamily Superfamily superfamilyc.62.1 — vWA-like
Family Family familyc.62.1.4 — Ku80 subunit N-terminal domain

CATH v4.4 (8 domains)

Domain ID domain_id1jeqA01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily410 — von Willebrand factor, type A domain
Domain ID domain_id1jeqA02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology290 — Ku70; Chain: A; Domain 2
Homologous superfamily homologous superfamily10 —
Domain ID domain_id1jeqA03
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology970 — Ku70, bridge and pillars
Homologous superfamily homologous superfamily10 — Ku70, bridge and pillars
Domain ID domain_id1jeqA04
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1600 — Ku70; Chain: A; domain 4
Homologous superfamily homologous superfamily10 —
Domain ID domain_id1jeqA05
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology720 — Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1
Homologous superfamily homologous superfamily30 — SAP domain
Domain ID domain_id1jeqB01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily410 — von Willebrand factor, type A domain
Domain ID domain_id1jeqB02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology290 — Ku70; Chain: A; Domain 2
Homologous superfamily homologous superfamily10 —
Domain ID domain_id1jeqB03
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1600 — Ku70; Chain: A; domain 4
Homologous superfamily homologous superfamily10 —
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7. Citations (1)