9g9l

DNA-PK + Polymerase lambda

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA-dependent protein kinase catalytic subunit

OrganismNot specified

UniProt P78527

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 5 DNA 2 X-ray repair cross-complementing protein 6 × 1 (P12956) X-ray repair cross-complementing protein 5 × 1 (P13010) DNA polymerase lambda × 1 (Q9UGP5) Protein PAXX × 1 (Q9BUH6) DNA × 1 DNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRKDC_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–4128; UniProt 1–4128

X-ray repair cross-complementing protein 6

Homo sapiens

UniProt P12956

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 5 DNA 2 DNA-dependent protein kinase catalytic subunit × 1 (P78527) X-ray repair cross-complementing protein 5 × 1 (P13010) DNA polymerase lambda × 1 (Q9UGP5) Protein PAXX × 1 (Q9BUH6) DNA × 1 DNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name XRCC6_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–609; UniProt 1–609

X-ray repair cross-complementing protein 5

Homo sapiens

UniProt P13010

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 5 DNA 2 DNA-dependent protein kinase catalytic subunit × 1 (P78527) X-ray repair cross-complementing protein 6 × 1 (P12956) DNA polymerase lambda × 1 (Q9UGP5) Protein PAXX × 1 (Q9BUH6) DNA × 1 DNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name XRCC5_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–732; UniProt 1–732

DNA polymerase lambda

Homo sapiens

UniProt Q9UGP5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 5 DNA 2 DNA-dependent protein kinase catalytic subunit × 1 (P78527) X-ray repair cross-complementing protein 6 × 1 (P12956) X-ray repair cross-complementing protein 5 × 1 (P13010) Protein PAXX × 1 (Q9BUH6) DNA × 1 DNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DPOLL_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain F; PDBConstruct 1–575; UniProt 1–575

Protein PAXX

Homo sapiens

UniProt Q9BUH6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 5 DNA 2 DNA-dependent protein kinase catalytic subunit × 1 (P78527) X-ray repair cross-complementing protein 6 × 1 (P12956) X-ray repair cross-complementing protein 5 × 1 (P13010) DNA polymerase lambda × 1 (Q9UGP5) DNA × 1 DNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PAXX_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain M; PDBConstruct 1–204; UniProt 1–204

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9g9l
Deposition date deposition_date2024-07-25
Structure title titleDNA-PK + Polymerase lambda
Keywords keywordsKinase, complex, DNA-binding, DNA BINDING PROTEIN; DNA BINDING PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9g9l__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9g9l__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9g9l__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)64.89 Å
Rg (electron density)64.70 Å
Total Rg64.75 Å
Atom count39800
Residues4991
Excluded volume711470 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9g9l__assembly_1__model_1 heptameric (7) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (7)

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7. Citations (1)