SAXSdb — 9qvf

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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Capsid protein

Turnip crinkle virus

当前结构中的状态

Assembly	聚集状态	构建体	突变与修饰	配体、离子与共同组分	实验方法与环境	结构质量
1	蛋白同源多聚体同源多聚体蛋白 × 180 PDB 声明：180-meric（180）与蛋白拷贝数一致	链 A； UniProt 1–351 链 B； UniProt 1–351 链 C； UniProt 1–351	未记录	无其他共同聚合物	ELECTRON MICROSCOPY cryo-EM缓冲液：pH 7.4；1 mM MgSO4 1mM NaPO4 and pH7.4 cryo-EM玻璃化条件：冷冻剂 ETHANE	分辨率 3.13 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly， “相对当前条目”直接指出证据层面的不同；没有差异标签表示当前已读取字段一致。

其他 PDB	相对当前条目 9QVF	Assembly / 聚集状态	构建体	突变与修饰	配体、离子与非聚合物	实验方法与环境	结构质量
3ZX8 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同实验环境不同结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 180 PDB 声明：180-MERIC	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE；pH 7.4；10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 11.50 Å
3ZX8 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同聚集状态不同实验环境不同结构质量不同	Assembly 2 蛋白同源多聚体同源多聚体；蛋白 × 3 PDB 声明：trimeric	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE；pH 7.4；10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 11.50 Å
3ZX8 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同聚集状态不同实验环境不同结构质量不同	Assembly 3 蛋白同源多聚体同源多聚体；蛋白 × 15 PDB 声明：pentadecameric	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE；pH 7.4；10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 11.50 Å
3ZX8 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同聚集状态不同实验环境不同结构质量不同	Assembly 4 蛋白同源多聚体同源多聚体；蛋白 × 18 PDB 声明：octadecameric	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE；pH 7.4；10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 11.50 Å
3ZX8 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同聚集状态不同实验环境不同结构质量不同	Assembly 5 蛋白同源多聚体同源多聚体；蛋白 × 3 PDB 声明：trimeric	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE；pH 7.4；10 MM SODIUM PHOSPHATE PH 7.4, 10 MM MAGNESIUM SULPHATE cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 11.50 Å
3ZX9 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同实验环境不同结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 180 PDB 声明：180-MERIC	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 100 MM TRIS PH 8.5, 5 MM EDTA；pH 8.5；100 MM TRIS PH 8.5, 5 MM EDTA cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 17.00 Å
3ZX9 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同聚集状态不同实验环境不同结构质量不同	Assembly 2 蛋白同源多聚体同源多聚体；蛋白 × 3 PDB 声明：trimeric	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 100 MM TRIS PH 8.5, 5 MM EDTA；pH 8.5；100 MM TRIS PH 8.5, 5 MM EDTA cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 17.00 Å
3ZX9 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同聚集状态不同实验环境不同结构质量不同	Assembly 3 蛋白同源多聚体同源多聚体；蛋白 × 15 PDB 声明：pentadecameric	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 100 MM TRIS PH 8.5, 5 MM EDTA；pH 8.5；100 MM TRIS PH 8.5, 5 MM EDTA cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 17.00 Å
3ZX9 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同聚集状态不同实验环境不同结构质量不同	Assembly 4 蛋白同源多聚体同源多聚体；蛋白 × 18 PDB 声明：octadecameric	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 100 MM TRIS PH 8.5, 5 MM EDTA；pH 8.5；100 MM TRIS PH 8.5, 5 MM EDTA cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 17.00 Å
3ZX9 Cryo-EM reconstruction of native and expanded Turnip Crinkle virus 提交 2011-08-08	构建体不同突变/修饰不同聚集状态不同实验环境不同结构质量不同	Assembly 5 蛋白同源多聚体同源多聚体；蛋白 × 3 PDB 声明：trimeric	链 A 1–221（221 aa）链 A 225–246（22 aa）链 A 248–351（104 aa）链 B 1–221（221 aa）链 B 225–246（22 aa）链 B 248–351（104 aa）链 C 1–221（221 aa）链 C 225–246（22 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 100 MM TRIS PH 8.5, 5 MM EDTA；pH 8.5；100 MM TRIS PH 8.5, 5 MM EDTA cryo-EM玻璃化条件冷冻剂 ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 77, INSTRUMENT- DOUBLE SIDED AUTOMATED BLOTTER AND PLUNGER, METHOD- BLOT 1.6 SECONDS BEFORE PLUNGING,	分辨率 17.00 Å
3ZXA Structure and Assembly of Turnip Crinkle Virus I. X-ray Crystallographic Structure Analysis at 3.2 A Resolution 提交 2011-08-08	构建体不同聚集状态不同实验方法不同实验环境不同结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 60 PDB 声明：60-MERIC	链 C 1–220（220 aa）链 C 224–246（23 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	X-RAY DIFFRACTION X-ray结晶条件 pH 7；THE METHYL MERCURY ADDUCT WAS OBTAINED BY BRINGING STOCK SOLUTION OF VIRUS (3.5% TCV (W/V) IN 0.01% SODIUM AZIDE,) TO 6 EQUIVALENT METHYL MERCURY/PROTEIN SUBUNIT BY ADDITION OF 15 MILLIMOLAR-METHYL MERCURY NITRATE AND INCUBATING FOR 1 H. CRYSTALLIZATION WAS THEN INITIATED BY ADDITION OF AN APPROXIMATELY EQUAL VOLUME OF SATURATED SODIUM CITRATE (PH 7.0) AND ALLOWED TO PROCEED UNDISTURBED FOR 2 TO 4 MONTHS. THE OPTIMUM CONCENTRATION OF SODIUM CITRATE REQUIRED TO PRODUCE LARGE CRYSTALS VARIED FROM EXPERIMENT TO EXPERIMENT BUT WAS GENERALLY IN THE RANGE 42 TO 46% SATURATED.	分辨率 3.20 Å
3ZXA Structure and Assembly of Turnip Crinkle Virus I. X-ray Crystallographic Structure Analysis at 3.2 A Resolution 提交 2011-08-08	构建体不同聚集状态不同实验方法不同实验环境不同结构质量不同	Assembly 2 蛋白单体单体；蛋白 × 1 PDB 声明：monomeric	链 C 1–220（220 aa）链 C 224–246（23 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	X-RAY DIFFRACTION X-ray结晶条件 pH 7；THE METHYL MERCURY ADDUCT WAS OBTAINED BY BRINGING STOCK SOLUTION OF VIRUS (3.5% TCV (W/V) IN 0.01% SODIUM AZIDE,) TO 6 EQUIVALENT METHYL MERCURY/PROTEIN SUBUNIT BY ADDITION OF 15 MILLIMOLAR-METHYL MERCURY NITRATE AND INCUBATING FOR 1 H. CRYSTALLIZATION WAS THEN INITIATED BY ADDITION OF AN APPROXIMATELY EQUAL VOLUME OF SATURATED SODIUM CITRATE (PH 7.0) AND ALLOWED TO PROCEED UNDISTURBED FOR 2 TO 4 MONTHS. THE OPTIMUM CONCENTRATION OF SODIUM CITRATE REQUIRED TO PRODUCE LARGE CRYSTALS VARIED FROM EXPERIMENT TO EXPERIMENT BUT WAS GENERALLY IN THE RANGE 42 TO 46% SATURATED.	分辨率 3.20 Å
3ZXA Structure and Assembly of Turnip Crinkle Virus I. X-ray Crystallographic Structure Analysis at 3.2 A Resolution 提交 2011-08-08	构建体不同聚集状态不同实验方法不同实验环境不同结构质量不同	Assembly 3 蛋白同源多聚体同源多聚体；蛋白 × 5 PDB 声明：pentameric	链 C 1–220（220 aa）链 C 224–246（23 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	X-RAY DIFFRACTION X-ray结晶条件 pH 7；THE METHYL MERCURY ADDUCT WAS OBTAINED BY BRINGING STOCK SOLUTION OF VIRUS (3.5% TCV (W/V) IN 0.01% SODIUM AZIDE,) TO 6 EQUIVALENT METHYL MERCURY/PROTEIN SUBUNIT BY ADDITION OF 15 MILLIMOLAR-METHYL MERCURY NITRATE AND INCUBATING FOR 1 H. CRYSTALLIZATION WAS THEN INITIATED BY ADDITION OF AN APPROXIMATELY EQUAL VOLUME OF SATURATED SODIUM CITRATE (PH 7.0) AND ALLOWED TO PROCEED UNDISTURBED FOR 2 TO 4 MONTHS. THE OPTIMUM CONCENTRATION OF SODIUM CITRATE REQUIRED TO PRODUCE LARGE CRYSTALS VARIED FROM EXPERIMENT TO EXPERIMENT BUT WAS GENERALLY IN THE RANGE 42 TO 46% SATURATED.	分辨率 3.20 Å
3ZXA Structure and Assembly of Turnip Crinkle Virus I. X-ray Crystallographic Structure Analysis at 3.2 A Resolution 提交 2011-08-08	构建体不同聚集状态不同实验方法不同实验环境不同结构质量不同	Assembly 4 蛋白同源多聚体同源多聚体；蛋白 × 6 PDB 声明：hexameric	链 C 1–220（220 aa）链 C 224–246（23 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	X-RAY DIFFRACTION X-ray结晶条件 pH 7；THE METHYL MERCURY ADDUCT WAS OBTAINED BY BRINGING STOCK SOLUTION OF VIRUS (3.5% TCV (W/V) IN 0.01% SODIUM AZIDE,) TO 6 EQUIVALENT METHYL MERCURY/PROTEIN SUBUNIT BY ADDITION OF 15 MILLIMOLAR-METHYL MERCURY NITRATE AND INCUBATING FOR 1 H. CRYSTALLIZATION WAS THEN INITIATED BY ADDITION OF AN APPROXIMATELY EQUAL VOLUME OF SATURATED SODIUM CITRATE (PH 7.0) AND ALLOWED TO PROCEED UNDISTURBED FOR 2 TO 4 MONTHS. THE OPTIMUM CONCENTRATION OF SODIUM CITRATE REQUIRED TO PRODUCE LARGE CRYSTALS VARIED FROM EXPERIMENT TO EXPERIMENT BUT WAS GENERALLY IN THE RANGE 42 TO 46% SATURATED.	分辨率 3.20 Å
3ZXA Structure and Assembly of Turnip Crinkle Virus I. X-ray Crystallographic Structure Analysis at 3.2 A Resolution 提交 2011-08-08	构建体不同聚集状态不同实验方法不同实验环境不同结构质量不同	Assembly 5 蛋白单体单体；蛋白 × 1 PDB 声明：monomeric	链 C 1–220（220 aa）链 C 224–246（23 aa）链 C 248–351（104 aa）	未记录	未记录非水小分子	X-RAY DIFFRACTION X-ray结晶条件 pH 7；THE METHYL MERCURY ADDUCT WAS OBTAINED BY BRINGING STOCK SOLUTION OF VIRUS (3.5% TCV (W/V) IN 0.01% SODIUM AZIDE,) TO 6 EQUIVALENT METHYL MERCURY/PROTEIN SUBUNIT BY ADDITION OF 15 MILLIMOLAR-METHYL MERCURY NITRATE AND INCUBATING FOR 1 H. CRYSTALLIZATION WAS THEN INITIATED BY ADDITION OF AN APPROXIMATELY EQUAL VOLUME OF SATURATED SODIUM CITRATE (PH 7.0) AND ALLOWED TO PROCEED UNDISTURBED FOR 2 TO 4 MONTHS. THE OPTIMUM CONCENTRATION OF SODIUM CITRATE REQUIRED TO PRODUCE LARGE CRYSTALS VARIED FROM EXPERIMENT TO EXPERIMENT BUT WAS GENERALLY IN THE RANGE 42 TO 46% SATURATED.	分辨率 3.20 Å
9GDW RNA binding domain of Turnip crinkle virus p38, p38R 提交 2024-08-06	构建体不同突变/修饰不同聚集状态不同实验方法不同实验环境不同结构质量不同	Assembly 1 蛋白单体单体；蛋白 × 1 PDB 声明：monomeric	链 A 1–45（45 aa）	未记录	未记录非水小分子	SOLUTION NMR NMR测量条件 pH 7；283 K；离子强度（mmCIF原始值）50；压力 1 NMR样品组成 1.0 mM [U-100% 13C; U-100% 15N] protein, 90% H2O/10% D2O \| 90% H2O/10% D2O	分辨率未提供
9QVG Turnip Crinkle Virus: virions (TCV-M) 提交 2025-04-11	结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 180 PDB 声明：180-meric	链 A 1–351（351 aa）链 B 1–351（351 aa）链 C 1–351（351 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 pH 7.4；1 mM MgSO4 1mM NaPO4 and pH7.4 cryo-EM玻璃化条件冷冻剂 ETHANE	分辨率 3.43 Å
9QVH Turnip Crinkle Virus: virus-like particles (TCV-P38) 提交 2025-04-11	结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 180 PDB 声明：180-meric	链 A 1–351（351 aa）链 B 1–351（351 aa）链 C 1–351（351 aa）	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 pH 7.4；1 mM MgSO4 1mM NaPO4 and pH7.4 cryo-EM玻璃化条件冷冻剂 ETHANE	分辨率 3.47 Å
9Y2Z Icosahedral symmetric structure of an expansion intermediate of Turnip Crinkle Virus (Asymmetric Trimer Unit) 提交 2025-09-01	构建体不同实验环境不同结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 180 PDB 声明：180-meric	链 A 1–351（351 aa）片段：R domain 链 B 1–351（351 aa）片段：R domain 链 C 1–351（351 aa）片段：R domain	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 pH 5.4 cryo-EM玻璃化条件冷冻剂 ETHANE	分辨率 2.87 Å
9Y31 Symmetry relaxed asymmetric structure of an expansion intermediate of Turnip crinkle virus 提交 2025-09-01	构建体不同聚集状态不同实验环境不同结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 3 PDB 声明：trimeric	链 C 1–351（351 aa）片段：R domain 链 E 1–351（351 aa）片段：R domain 链 H 1–351（351 aa）片段：R domain	未记录	未记录非水小分子	ELECTRON MICROSCOPY cryo-EM缓冲液 pH 5.4 cryo-EM玻璃化条件冷冻剂 ETHANE	分辨率 3.62 Å

共 8 个其他 PDB 条目、20 个 assembly。打开独立比较页并筛选聚集状态

查看构建体与数据证据

UniProt名称	CAPSD_TCV
Isoform	—
PDB实体	1
链与序列区间	作者链 A； PDB构建体 1–351； UniProt 1–351 作者链 B； PDB构建体 1–351； UniProt 1–351 作者链 C； PDB构建体 1–351； UniProt 1–351

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id	9qvf
沉积日期 deposition_date	2025-04-11
结构标题 title	Turnip Crinkle Virus: virus-like particles (TCV-P38+1)
关键词 keywords	ssRNA plant virus, icosahedral, RNA packaging, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
实验方法 method	ELECTRON MICROSCOPY

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3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	31.45 Å
回转半径 Rg (电子) rg_electron	30.51 Å
零角强度 I(0) i0	132770000.00
分子量 molecular_weight	90337.0 kDa
排除体积 excluded_volume	112770 Å³
包络体积 envelope_volume	150170 Å³
水化壳体积 shell_volume	40552 Å³
包络直径 envelope_diameter	111.7 Å
壳层 Rg shell_rg	38.05 Å
包络 Rg envelope_rg	30.04 Å
形状 Rg shape_rg	30.49 Å
总 Rg total_rg	31.27 Å
总原子数 total_atoms	12627
残基数 n_residues	838
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	105.4 Å
Rg (实空间) rg_real	31.24 Å
Rg 误差 (实空间) rg_real_error	0.82 Å
I(0) (实空间) i0_real	1.3280e+08
I(0) 误差 (实空间) i0_real_error	2.1750e+06
Rg (倒空间) rg_reciprocal	31.33 Å
I(0) (倒空间) i0_reciprocal	132800000.0000
解质量估计 total_estimate	0.6570
解质量评级 solution_quality	REASONABLE a REASONABLE solution
P(r) 峰数 n_peaks	2
主峰位置 r_peak_primary	42.2 Å
偏度 Skewness skewness	0.098
峰度 Kurtosis kurtosis	-0.410
角度范围 angular_range	— – 0.2500 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	14910000.0000
实空间数据点数 n_real_points	51
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.788; Stabil: 1.000; Sysdev: 0.062; Positv: 1.000; Valcen: 0.993; Smooth: 0.995

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5. 晶体学与实验 5. Crystallography & Experiment

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6. 实体与聚合物信息 Entities & Polymers (1)

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8. 引用文献 (1)

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晶胞边长 a length_a	1.000 Å
晶胞边长 b length_b	1.000 Å
晶胞边长 c length_c	1.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	—

空间群 space_group	P 1
空间群编号 int_tables_number	1
晶系 crystal_system	—

分辨率 resolution	3.13 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	48900

描述 description	Capsid protein
分子量 formula_weight	38170.9 kDa
来源方法 src_method	man
拷贝数 entity_count	3

聚合物类型 type	polypeptide(L)
链编号 strand_id	A,B,C
原子数 atom_count	12627

Turnip Crinkle Virus: virus-like particles (TCV-P38+1)

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Capsid protein

当前结构中的状态

数据库中的同蛋白其他状态

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

2. 结构基本信息 2. Structure Basics

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

5. 晶体学与实验 5. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

冷冻电镜 EM 3D

6. 实体与聚合物信息 Entities & Polymers (1)

实体 1 Entity 1 polymer

聚合物 Polymer

来源 Source

8. 引用文献 (1)

9. 文件与曲线 (10)

Files (7)

Curves (3)

来源生物 organism	Turnip crinkle virus
NCBI 分类编号 ncbi_taxonomy_id	11988
宿主生物 host_organism	Nicotiana benthamiana

fit	/app/data/saxs_computation/qv/9qvf/9qvf.fit
pddf	/app/data/pr_computation/qv/9qvf/9qvf.pr.out
profile	/app/data/saxs_computation/qv/9qvf/9qvf.dat