SAXSdb — 9qw9

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

Homo sapiens

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 78	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	MVP_HUMAN
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–893； UniProt 1–893 Author chain AA； PDBConstruct 1–893； UniProt 1–893 Author chain AB； PDBConstruct 1–893； UniProt 1–893 Author chain AC； PDBConstruct 1–893； UniProt 1–893 Author chain B； PDBConstruct 1–893； UniProt 1–893 Author chain BA； PDBConstruct 1–893； UniProt 1–893 Author chain BB； PDBConstruct 1–893； UniProt 1–893 Author chain C； PDBConstruct 1–893； UniProt 1–893 Author chain CA； PDBConstruct 1–893； UniProt 1–893 Author chain CB； PDBConstruct 1–893； UniProt 1–893 Author chain D； PDBConstruct 1–893； UniProt 1–893 Author chain DA； PDBConstruct 1–893； UniProt 1–893 Author chain DB； PDBConstruct 1–893； UniProt 1–893 Author chain E； PDBConstruct 1–893； UniProt 1–893 Author chain EA； PDBConstruct 1–893； UniProt 1–893 Author chain EB； PDBConstruct 1–893； UniProt 1–893 Author chain F； PDBConstruct 1–893； UniProt 1–893 Author chain FA； PDBConstruct 1–893； UniProt 1–893 Author chain FB； PDBConstruct 1–893； UniProt 1–893 Author chain G； PDBConstruct 1–893； UniProt 1–893 Author chain GA； PDBConstruct 1–893； UniProt 1–893 Author chain GB； PDBConstruct 1–893； UniProt 1–893 Author chain H； PDBConstruct 1–893； UniProt 1–893 Author chain HA； PDBConstruct 1–893； UniProt 1–893 Author chain HB； PDBConstruct 1–893； UniProt 1–893 Author chain I； PDBConstruct 1–893； UniProt 1–893 Author chain IA； PDBConstruct 1–893； UniProt 1–893 Author chain IB； PDBConstruct 1–893； UniProt 1–893 Author chain J； PDBConstruct 1–893； UniProt 1–893 Author chain JA； PDBConstruct 1–893； UniProt 1–893 Author chain JB； PDBConstruct 1–893； UniProt 1–893 Author chain K； PDBConstruct 1–893； UniProt 1–893 Author chain KA； PDBConstruct 1–893； UniProt 1–893 Author chain KB； PDBConstruct 1–893； UniProt 1–893 Author chain L； PDBConstruct 1–893； UniProt 1–893 Author chain LA； PDBConstruct 1–893； UniProt 1–893 Author chain LB； PDBConstruct 1–893； UniProt 1–893 Author chain M； PDBConstruct 1–893； UniProt 1–893 Author chain MA； PDBConstruct 1–893； UniProt 1–893 Author chain MB； PDBConstruct 1–893； UniProt 1–893 Author chain N； PDBConstruct 1–893； UniProt 1–893 Author chain NA； PDBConstruct 1–893； UniProt 1–893 Author chain NB； PDBConstruct 1–893； UniProt 1–893 Author chain O； PDBConstruct 1–893； UniProt 1–893 Author chain OA； PDBConstruct 1–893； UniProt 1–893 Author chain OB； PDBConstruct 1–893； UniProt 1–893 Author chain P； PDBConstruct 1–893； UniProt 1–893 Author chain PA； PDBConstruct 1–893； UniProt 1–893 Author chain PB； PDBConstruct 1–893； UniProt 1–893 Author chain Q； PDBConstruct 1–893； UniProt 1–893 Author chain QA； PDBConstruct 1–893； UniProt 1–893 Author chain QB； PDBConstruct 1–893； UniProt 1–893 Author chain R； PDBConstruct 1–893； UniProt 1–893 Author chain RA； PDBConstruct 1–893； UniProt 1–893 Author chain RB； PDBConstruct 1–893； UniProt 1–893 Author chain S； PDBConstruct 1–893； UniProt 1–893 Author chain SA； PDBConstruct 1–893； UniProt 1–893 Author chain SB； PDBConstruct 1–893； UniProt 1–893 Author chain T； PDBConstruct 1–893； UniProt 1–893 Author chain TA； PDBConstruct 1–893； UniProt 1–893 Author chain TB； PDBConstruct 1–893； UniProt 1–893 Author chain UA； PDBConstruct 1–893； UniProt 1–893 Author chain UB； PDBConstruct 1–893； UniProt 1–893 Author chain V； PDBConstruct 1–893； UniProt 1–893 Author chain VA； PDBConstruct 1–893； UniProt 1–893 Author chain VB； PDBConstruct 1–893； UniProt 1–893 Author chain W； PDBConstruct 1–893； UniProt 1–893 Author chain WA； PDBConstruct 1–893； UniProt 1–893 Author chain WB； PDBConstruct 1–893； UniProt 1–893 Author chain X； PDBConstruct 1–893； UniProt 1–893 Author chain XA； PDBConstruct 1–893； UniProt 1–893 Author chain XB； PDBConstruct 1–893； UniProt 1–893 Author chain Y； PDBConstruct 1–893； UniProt 1–893 Author chain YA； PDBConstruct 1–893； UniProt 1–893 Author chain YB； PDBConstruct 1–893； UniProt 1–893 Author chain Z； PDBConstruct 1–893； UniProt 1–893 Author chain ZA； PDBConstruct 1–893； UniProt 1–893 Author chain ZB； PDBConstruct 1–893； UniProt 1–893

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9qw9
Deposition date deposition_date	2025-04-14
Structure title title	Human vault protein - primed conformation
Keywords keywords	Vault protein, vault, MVP, TRANSPORT PROTEIN, CYTOSOLIC PROTEIN; CYTOSOLIC PROTEIN
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9qw9__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9qw9__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

9qw9__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	223.90 Å
Total Rg	224.20 Å
Atom count	966108
Residues	60762
Excluded volume	8555400 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`9qw9__assembly_1__model_1`	78-meric （78）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Description description	Major vault protein
Molecular weight formula_weight	99452.8 kDa
Source method src_method	man
Copy count entity_count	78

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	;A,AA,AB,AC,B,BA,BB,C,CA,CB,D,DA,DB,E,EA,EB,F,FA,FB,G,GA,GB,H,HA,HB,I,IA,IB,J,JA,JB,K,KA,KB,L,LA,LB,M,MA,MB,N,NA,NB,O,OA,OB,P,PA,PB,Q,QA,QB,R,RA,RB,S,SA,SB,T,TA,TB,UA,UB,V,VA,VB,W,WA,WB,X,XA,XB,Y,YA,YB,Z,ZA,ZB ;
Atom count atom_count	966108

MATEEFIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPMRMVTVPPRHYCTVANPVSRDAQGLVLFDVTGQVRLRHADLEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVILTEKTALHLRARRNFRDFRGVSRRTGEEWLVTVQDTEAHVPDVHEEVLGVVPITTLGPHNYCVILDPVGPDGKNQLGQKRVVKGEKSFFLQPGEQLEQGIQDVYVLSEQQGLLLRALQPLEEGEDEEKVSHQAGDHWLIRGPLEYVPSAKVEVVEERQAIPLDENEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPPGVEELLNKGQDPLADRGEKDTAKSLQPLAPRNKTRVVSYRVPHNAAVQVYDYREKRARVVFGPELVSLGPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFEVNDRKDPQETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRTAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEALSMAVESTGTAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELQRVQKVRELELVYARAQLELEVSKAQQLAEVEVKKFKQMTEAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPINLFNTAFGLLGMGPEGQPLGRRVASGPSPGEGISPQSAQAPQAPGDNHVVPVLR

Source Source

Source organism organism	Homo sapiens
Common name common_name	human
NCBI taxonomy ID ncbi_taxonomy_id	9606
Host organism host_organism	Komagataella phaffii

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	3.09 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	11172

Human vault protein - primed conformation

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9qw9__assembly_1__model_1

9qw9__assembly_1__model_1 | I(q)

9qw9__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Human vault protein - primed conformation

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9qw9__assembly_1__model_1

9qw9__assembly_1__model_1 | I(q)

9qw9__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)