SAXSdb — 11jb

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

Homo sapiens

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 78	;[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE ; × 78	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	MVP_HUMAN
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain 0； PDBConstruct 1–893； UniProt 1–893 Author chain 1； PDBConstruct 1–893； UniProt 1–893 Author chain 2； PDBConstruct 1–893； UniProt 1–893 Author chain 3； PDBConstruct 1–893； UniProt 1–893 Author chain 4； PDBConstruct 1–893； UniProt 1–893 Author chain 5； PDBConstruct 1–893； UniProt 1–893 Author chain 6； PDBConstruct 1–893； UniProt 1–893 Author chain 7； PDBConstruct 1–893； UniProt 1–893 Author chain 8； PDBConstruct 1–893； UniProt 1–893 Author chain 9； PDBConstruct 1–893； UniProt 1–893 Author chain A； PDBConstruct 1–893； UniProt 1–893 Author chain AA； PDBConstruct 1–893； UniProt 1–893 Author chain AB； PDBConstruct 1–893； UniProt 1–893 Author chain AC； PDBConstruct 1–893； UniProt 1–893 Author chain AD； PDBConstruct 1–893； UniProt 1–893 Author chain AE； PDBConstruct 1–893； UniProt 1–893 Author chain AF； PDBConstruct 1–893； UniProt 1–893 Author chain AG； PDBConstruct 1–893； UniProt 1–893 Author chain AH； PDBConstruct 1–893； UniProt 1–893 Author chain AI； PDBConstruct 1–893； UniProt 1–893 Author chain AJ； PDBConstruct 1–893； UniProt 1–893 Author chain AK； PDBConstruct 1–893； UniProt 1–893 Author chain AL； PDBConstruct 1–893； UniProt 1–893 Author chain AM； PDBConstruct 1–893； UniProt 1–893 Author chain AN； PDBConstruct 1–893； UniProt 1–893 Author chain AO； PDBConstruct 1–893； UniProt 1–893 Author chain AP； PDBConstruct 1–893； UniProt 1–893 Author chain B； PDBConstruct 1–893； UniProt 1–893 Author chain C； PDBConstruct 1–893； UniProt 1–893 Author chain D； PDBConstruct 1–893； UniProt 1–893 Author chain E； PDBConstruct 1–893； UniProt 1–893 Author chain F； PDBConstruct 1–893； UniProt 1–893 Author chain G； PDBConstruct 1–893； UniProt 1–893 Author chain H； PDBConstruct 1–893； UniProt 1–893 Author chain I； PDBConstruct 1–893； UniProt 1–893 Author chain J； PDBConstruct 1–893； UniProt 1–893 Author chain K； PDBConstruct 1–893； UniProt 1–893 Author chain L； PDBConstruct 1–893； UniProt 1–893 Author chain M； PDBConstruct 1–893； UniProt 1–893 Author chain N； PDBConstruct 1–893； UniProt 1–893 Author chain O； PDBConstruct 1–893； UniProt 1–893 Author chain P； PDBConstruct 1–893； UniProt 1–893 Author chain Q； PDBConstruct 1–893； UniProt 1–893 Author chain R； PDBConstruct 1–893； UniProt 1–893 Author chain S； PDBConstruct 1–893； UniProt 1–893 Author chain T； PDBConstruct 1–893； UniProt 1–893 Author chain U； PDBConstruct 1–893； UniProt 1–893 Author chain V； PDBConstruct 1–893； UniProt 1–893 Author chain W； PDBConstruct 1–893； UniProt 1–893 Author chain X； PDBConstruct 1–893； UniProt 1–893 Author chain Y； PDBConstruct 1–893； UniProt 1–893 Author chain Z； PDBConstruct 1–893； UniProt 1–893 Author chain a； PDBConstruct 1–893； UniProt 1–893 Author chain b； PDBConstruct 1–893； UniProt 1–893 Author chain c； PDBConstruct 1–893； UniProt 1–893 Author chain d； PDBConstruct 1–893； UniProt 1–893 Author chain e； PDBConstruct 1–893； UniProt 1–893 Author chain f； PDBConstruct 1–893； UniProt 1–893 Author chain g； PDBConstruct 1–893； UniProt 1–893 Author chain h； PDBConstruct 1–893； UniProt 1–893 Author chain i； PDBConstruct 1–893； UniProt 1–893 Author chain j； PDBConstruct 1–893； UniProt 1–893 Author chain k； PDBConstruct 1–893； UniProt 1–893 Author chain l； PDBConstruct 1–893； UniProt 1–893 Author chain m； PDBConstruct 1–893； UniProt 1–893 Author chain n； PDBConstruct 1–893； UniProt 1–893 Author chain o； PDBConstruct 1–893； UniProt 1–893 Author chain p； PDBConstruct 1–893； UniProt 1–893 Author chain q； PDBConstruct 1–893； UniProt 1–893 Author chain r； PDBConstruct 1–893； UniProt 1–893 Author chain s； PDBConstruct 1–893； UniProt 1–893 Author chain t； PDBConstruct 1–893； UniProt 1–893 Author chain u； PDBConstruct 1–893； UniProt 1–893 Author chain v； PDBConstruct 1–893； UniProt 1–893 Author chain w； PDBConstruct 1–893； UniProt 1–893 Author chain x； PDBConstruct 1–893； UniProt 1–893 Author chain y； PDBConstruct 1–893； UniProt 1–893 Author chain z； PDBConstruct 1–893； UniProt 1–893

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	11jb
Deposition date deposition_date	2026-02-26
Structure title title	RNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)
Keywords keywords	RNA Vault, complex, TEP1, PARP4, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

11jb__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

11jb__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

11jb__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	223.20 Å
Total Rg	223.60 Å
Atom count	965562
Residues	60450
Excluded volume	8549500 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`11jb__assembly_1__model_1`	78-meric （78）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Description description	Major vault protein
Molecular weight formula_weight	99452.8 kDa
Source method src_method	man
Copy count entity_count	78

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	;A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,1,2,3,4,5,6,7,8,9,0,AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP ;
Atom count atom_count	965562

MATEEFIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPMRMVTVPPRHYCTVANPVSRDAQGLVLFDVTGQVRLRHADLEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVILTEKTALHLRARRNFRDFRGVSRRTGEEWLVTVQDTEAHVPDVHEEVLGVVPITTLGPHNYCVILDPVGPDGKNQLGQKRVVKGEKSFFLQPGEQLEQGIQDVYVLSEQQGLLLRALQPLEEGEDEEKVSHQAGDHWLIRGPLEYVPSAKVEVVEERQAIPLDENEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPPGVEELLNKGQDPLADRGEKDTAKSLQPLAPRNKTRVVSYRVPHNAAVQVYDYREKRARVVFGPELVSLGPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFEVNDRKDPQETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRTAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEALSMAVESTGTAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELQRVQKVRELELVYARAQLELEVSKAQQLAEVEVKKFKQMTEAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPINLFNTAFGLLGMGPEGQPLGRRVASGPSPGEGISPQSAQAPQAPGDNHVVPVLR

Source Source

Source organism organism	Homo sapiens
Common name common_name	human
NCBI taxonomy ID ncbi_taxonomy_id	9606
Host organism host_organism	Homo sapiens

Entity 2 Entity 2 non-polymer

Description description	;[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE ;
Molecular weight formula_weight	559.3 kDa
Source method src_method	syn
Copy count entity_count	78

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	triclinic

Resolution resolution	2.16 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	16218

RNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

11jb__assembly_1__model_1

11jb__assembly_1__model_1 | I(q)

11jb__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

7. Citations (1)

RNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

11jb__assembly_1__model_1

11jb__assembly_1__model_1 | I(q)

11jb__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

7. Citations (1)