11jb

RNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)

Method: ELECTRON MICROSCOPY Dmax: 534.9 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

Homo sapiens

UniProt Q14764

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 78 PDB declaration: 78-meric(78) Consistent with protein copy count Chain 0; UniProt 1–893 Chain 1; UniProt 1–893 Chain 2; UniProt 1–893 Chain 3; UniProt 1–893 Chain 4; UniProt 1–893 Chain 5; UniProt 1–893 Chain 6; UniProt 1–893 Chain 7; UniProt 1–893 Chain 8; UniProt 1–893 Chain 9; UniProt 1–893 Chain A; UniProt 1–893 Chain AA; UniProt 1–893 Chain AB; UniProt 1–893 Chain AC; UniProt 1–893 Chain AD; UniProt 1–893 Chain AE; UniProt 1–893 Chain AF; UniProt 1–893 Chain AG; UniProt 1–893 Chain AH; UniProt 1–893 Chain AI; UniProt 1–893 Chain AJ; UniProt 1–893 Chain AK; UniProt 1–893 Chain AL; UniProt 1–893 Chain AM; UniProt 1–893 Chain AN; UniProt 1–893 Chain AO; UniProt 1–893 Chain AP; UniProt 1–893 Chain B; UniProt 1–893 Chain C; UniProt 1–893 Chain D; UniProt 1–893 Chain E; UniProt 1–893 Chain F; UniProt 1–893 Chain G; UniProt 1–893 Chain H; UniProt 1–893 Chain I; UniProt 1–893 Chain J; UniProt 1–893 Chain K; UniProt 1–893 Chain L; UniProt 1–893 Chain M; UniProt 1–893 Chain N; UniProt 1–893 Chain O; UniProt 1–893 Chain P; UniProt 1–893 Chain Q; UniProt 1–893 Chain R; UniProt 1–893 Chain S; UniProt 1–893 Chain T; UniProt 1–893 Chain U; UniProt 1–893 Chain V; UniProt 1–893 Chain W; UniProt 1–893 Chain X; UniProt 1–893 Chain Y; UniProt 1–893 Chain Z; UniProt 1–893 Chain a; UniProt 1–893 Chain b; UniProt 1–893 Chain c; UniProt 1–893 Chain d; UniProt 1–893 Chain e; UniProt 1–893 Chain f; UniProt 1–893 Chain g; UniProt 1–893 Chain h; UniProt 1–893 Chain i; UniProt 1–893 Chain j; UniProt 1–893 Chain k; UniProt 1–893 Chain l; UniProt 1–893 Chain m; UniProt 1–893 Chain n; UniProt 1–893 Chain o; UniProt 1–893 Chain p; UniProt 1–893 Chain q; UniProt 1–893 Chain r; UniProt 1–893 Chain s; UniProt 1–893 Chain t; UniProt 1–893 Chain u; UniProt 1–893 Chain v; UniProt 1–893 Chain w; UniProt 1–893 Chain x; UniProt 1–893 Chain y; UniProt 1–893 Chain z; UniProt 1–893 Not recorded AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE × 78 ELECTRON MICROSCOPY cryo-EM buffer:pH 8;50 Tris 8.0, 75 mM NaCl, 1.5 mM MgCl2, 1 mM DTT, 1 mM NADP, 0.025% DDM cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.16 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

19 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MVP_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain 0; PDBConstruct 1–893; UniProt 1–893 Author chain 1; PDBConstruct 1–893; UniProt 1–893 Author chain 2; PDBConstruct 1–893; UniProt 1–893 Author chain 3; PDBConstruct 1–893; UniProt 1–893 Author chain 4; PDBConstruct 1–893; UniProt 1–893 Author chain 5; PDBConstruct 1–893; UniProt 1–893 Author chain 6; PDBConstruct 1–893; UniProt 1–893 Author chain 7; PDBConstruct 1–893; UniProt 1–893 Author chain 8; PDBConstruct 1–893; UniProt 1–893 Author chain 9; PDBConstruct 1–893; UniProt 1–893 Author chain A; PDBConstruct 1–893; UniProt 1–893 Author chain AA; PDBConstruct 1–893; UniProt 1–893 Author chain AB; PDBConstruct 1–893; UniProt 1–893 Author chain AC; PDBConstruct 1–893; UniProt 1–893 Author chain AD; PDBConstruct 1–893; UniProt 1–893 Author chain AE; PDBConstruct 1–893; UniProt 1–893 Author chain AF; PDBConstruct 1–893; UniProt 1–893 Author chain AG; PDBConstruct 1–893; UniProt 1–893 Author chain AH; PDBConstruct 1–893; UniProt 1–893 Author chain AI; PDBConstruct 1–893; UniProt 1–893 Author chain AJ; PDBConstruct 1–893; UniProt 1–893 Author chain AK; PDBConstruct 1–893; UniProt 1–893 Author chain AL; PDBConstruct 1–893; UniProt 1–893 Author chain AM; PDBConstruct 1–893; UniProt 1–893 Author chain AN; PDBConstruct 1–893; UniProt 1–893 Author chain AO; PDBConstruct 1–893; UniProt 1–893 Author chain AP; PDBConstruct 1–893; UniProt 1–893 Author chain B; PDBConstruct 1–893; UniProt 1–893 Author chain C; PDBConstruct 1–893; UniProt 1–893 Author chain D; PDBConstruct 1–893; UniProt 1–893 Author chain E; PDBConstruct 1–893; UniProt 1–893 Author chain F; PDBConstruct 1–893; UniProt 1–893 Author chain G; PDBConstruct 1–893; UniProt 1–893 Author chain H; PDBConstruct 1–893; UniProt 1–893 Author chain I; PDBConstruct 1–893; UniProt 1–893 Author chain J; PDBConstruct 1–893; UniProt 1–893 Author chain K; PDBConstruct 1–893; UniProt 1–893 Author chain L; PDBConstruct 1–893; UniProt 1–893 Author chain M; PDBConstruct 1–893; UniProt 1–893 Author chain N; PDBConstruct 1–893; UniProt 1–893 Author chain O; PDBConstruct 1–893; UniProt 1–893 Author chain P; PDBConstruct 1–893; UniProt 1–893 Author chain Q; PDBConstruct 1–893; UniProt 1–893 Author chain R; PDBConstruct 1–893; UniProt 1–893 Author chain S; PDBConstruct 1–893; UniProt 1–893 Author chain T; PDBConstruct 1–893; UniProt 1–893 Author chain U; PDBConstruct 1–893; UniProt 1–893 Author chain V; PDBConstruct 1–893; UniProt 1–893 Author chain W; PDBConstruct 1–893; UniProt 1–893 Author chain X; PDBConstruct 1–893; UniProt 1–893 Author chain Y; PDBConstruct 1–893; UniProt 1–893 Author chain Z; PDBConstruct 1–893; UniProt 1–893 Author chain a; PDBConstruct 1–893; UniProt 1–893 Author chain b; PDBConstruct 1–893; UniProt 1–893 Author chain c; PDBConstruct 1–893; UniProt 1–893 Author chain d; PDBConstruct 1–893; UniProt 1–893 Author chain e; PDBConstruct 1–893; UniProt 1–893 Author chain f; PDBConstruct 1–893; UniProt 1–893 Author chain g; PDBConstruct 1–893; UniProt 1–893 Author chain h; PDBConstruct 1–893; UniProt 1–893 Author chain i; PDBConstruct 1–893; UniProt 1–893 Author chain j; PDBConstruct 1–893; UniProt 1–893 Author chain k; PDBConstruct 1–893; UniProt 1–893 Author chain l; PDBConstruct 1–893; UniProt 1–893 Author chain m; PDBConstruct 1–893; UniProt 1–893 Author chain n; PDBConstruct 1–893; UniProt 1–893 Author chain o; PDBConstruct 1–893; UniProt 1–893 Author chain p; PDBConstruct 1–893; UniProt 1–893 Author chain q; PDBConstruct 1–893; UniProt 1–893 Author chain r; PDBConstruct 1–893; UniProt 1–893 Author chain s; PDBConstruct 1–893; UniProt 1–893 Author chain t; PDBConstruct 1–893; UniProt 1–893 Author chain u; PDBConstruct 1–893; UniProt 1–893 Author chain v; PDBConstruct 1–893; UniProt 1–893 Author chain w; PDBConstruct 1–893; UniProt 1–893 Author chain x; PDBConstruct 1–893; UniProt 1–893 Author chain y; PDBConstruct 1–893; UniProt 1–893 Author chain z; PDBConstruct 1–893; UniProt 1–893

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 11jb

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 11jb
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2. Structure Basics 2. Structure Basics

Entry ID entry_id11jb
Deposition date deposition_date2026-02-26
Structure title titleRNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)
Keywords keywordsRNA Vault, complex, TEP1, PARP4, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier
Radius of gyration Rg (electron density) rg_electron223.20
Forward intensity I(0) i0640114000000.00
Molecular weight molecular_weight6833600.0 kDa
Excluded volume excluded_volume8549500 ų
Envelope volume envelope_volume46201000 ų
Hydration-shell volume shell_volume1845400 ų
Envelope diameter envelope_diameter673.2
Shell Rg shell_rg223.40
Envelope Rg envelope_rg184.40
Shape Rg shape_rg223.10
Total Rg total_rg223.60
Total atoms total_atoms965562
Residues n_residues60450
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax534.9
Rg (real space) rg_real212.60
Rg uncertainty (real space) rg_real_error1.07
I(0) (real space) i0_real5.6700e+11
I(0) uncertainty (real space) i0_real_error1.2280e+10
Rg (reciprocal space) rg_reciprocal171.90
I(0) (reciprocal space) i0_reciprocal348400000000.0000
Solution quality estimate total_estimate0.8871
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary305.7
Skewness Skewness skewness-0.298
Kurtosis Kurtosis kurtosis-0.704
Angular range angular_range— – 0.0350 −1
Current regularization parameter α current_alpha3.3980
Highest regularization parameter α highest_alpha46700000000.0000
Real-space data points n_real_points8
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 1.418; Oscil: 0.992; Stabil: 0.912; Sysdev: 1.000; Positv: 1.000; Valcen: 0.908; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

8. Citations (1)

9. Files and Curves (10)