Human vault protein - committed conformation

Method: ELECTRON MICROSCOPY D_max: 526.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9qwq
deposition_date	2025-04-15
title	Human vault protein - committed conformation
keywords	Vault protein, vault, MVP, CYTOSOLIC PROTEIN; CYTOSOLIC PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	222.80 Å
i0	635835000000.00
molecular_weight	6832100.0 kDa
excluded_volume	8555400 Å³
envelope_volume	46085000 Å³
shell_volume	1843400 Å³
envelope_diameter	669.4 Å
shell_rg	223.30 Å
envelope_rg	184.10 Å
shape_rg	222.70 Å
total_rg	223.20 Å
total_atoms	482118
n_residues	60762
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	526.8 Å
rg_real	212.20 Å
rg_real_error	1.05 Å
i0_real	5.6320e+11
i0_real_error	1.2780e+10
rg_reciprocal	172.00 Å
i0_reciprocal	344300000000.0000
total_estimate	0.8911
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	301.0 Å
skewness	-0.314
kurtosis	-0.712
angular_range	— – 0.0350 Å⁻¹
current_alpha	3.4040
highest_alpha	52650000000.0000
n_real_points	8
gnom_version	4.1.3
quality_criteria	AN1: 1.413; Oscil: 0.992; Stabil: 0.917; Sysdev: 1.000; Positv: 1.000; Valcen: 0.928; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

Entity 1 polymer

description	Major vault protein
formula_weight	99452.8 kDa
src_method	man
entity_count	78

Polymer

type	polypeptide(L)
strand_id	;A,AA,AB,AC,B,BA,BB,C,CA,CB,D,DA,DB,E,EA,EB,F,FA,FB,G,GA,GB,H,HA,HB,I,IA,IB,J,JA,JB,K,KA,KB,L,LA,LB,M,MA,MB,N,NA,NB,O,OA,OB,P,PA,PB,Q,QA,QB,R,RA,RB,S,SA,SB,T,TA,TB,UA,UB,V,VA,VB,W,WA,WB,X,XA,XB,Y,YA,YB,Z,ZA,ZB ;
atom_count	482118

MATEEFIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPMRMVTVPPRHYCTVANPVSRDAQGLVLFDVTGQVRLRHADLEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVILTEKTALHLRARRNFRDFRGVSRRTGEEWLVTVQDTEAHVPDVHEEVLGVVPITTLGPHNYCVILDPVGPDGKNQLGQKRVVKGEKSFFLQPGEQLEQGIQDVYVLSEQQGLLLRALQPLEEGEDEEKVSHQAGDHWLIRGPLEYVPSAKVEVVEERQAIPLDENEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPPGVEELLNKGQDPLADRGEKDTAKSLQPLAPRNKTRVVSYRVPHNAAVQVYDYREKRARVVFGPELVSLGPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFEVNDRKDPQETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRTAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEALSMAVESTGTAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELQRVQKVRELELVYARAQLELEVSKAQQLAEVEVKKFKQMTEAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPINLFNTAFGLLGMGPEGQPLGRRVASGPSPGEGISPQSAQAPQAPGDNHVVPVLR

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Komagataella phaffii

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	4.45 Å
resolution_method	—
num_particles	23998

fit	/app/data/saxs_computation/qw/9qwq/9qwq.fit
pddf	/app/data/pr_computation/qw/9qwq/9qwq.pr.out
profile	/app/data/saxs_computation/qw/9qwq/9qwq.dat

Human vault protein - committed conformation

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)