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9rks

Agrobacterium phage 7-7-1 neck 2 + tail terminator + tail sheath + tail tube

Method: ELECTRON MICROSCOPY D_max: 200.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9rks
deposition_date	2025-06-14
title	Agrobacterium phage 7-7-1 neck 2 + tail terminator + tail sheath + tail tube
keywords	Flagella phage, Agrobacterium sp. H13-3, neck 2 + tail terminator + sheath + tail, VIRUS; VIRUS
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	70.32 Å
rg_electron	70.08 Å
i0	5405090000.00
molecular_weight	611630.0 kDa
excluded_volume	760830 Å³
envelope_volume	1298600 Å³
shell_volume	155590 Å³
envelope_diameter	210.1 Å
shell_rg	70.82 Å
envelope_rg	67.31 Å
shape_rg	70.07 Å
total_rg	70.14 Å
total_atoms	84954
n_residues	5592
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	200.5 Å
rg_real	70.09 Å
rg_real_error	1.05 Å
i0_real	5.4050e+09
i0_real_error	1.0620e+08
rg_reciprocal	70.94 Å
i0_reciprocal	5413000000.0000
total_estimate	0.8447
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	82.0 Å
skewness	0.058
kurtosis	-0.672
angular_range	— – 0.1100 Å⁻¹
current_alpha	0.0005
highest_alpha	186400000.0000
n_real_points	23
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.995; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.990; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Structural protein
formula_weight	20292.7 kDa
src_method	nat
entity_count	6

Polymer

type	polypeptide(L)
strand_id	F,G,H,I,J,K
atom_count	84954

METKLKLTYSNRLTLPEIAKHIVSPTFHELEGRAIPVTGVEDDKEGQSAITKPFALVGLRIGDTSGPAEIGENSRINLRDDFIIEFNFNKDRYKKGGAETSLFSYYDYESIRDRLFNAMVAFAGEYGITFEFVSLDISTEGDTVYIEFRFRQNFDWCEADRESDTVIKAGSFSLNLKGC

Entity 2 polymer

description	Structural protein
formula_weight	16027.3 kDa
src_method	nat
entity_count	6

Polymer

type	polypeptide(L)
strand_id	O,P,Q,R,S,T

MKIKDRKHRVIVCSQKSDVDDNGQLLISRTGSINGWAAIEPVKAIRFSKDGVSMQKDTFQPTHDITMNYNPDVNISVSAWVYEHRLKSPPRWFKVISVINVDECSQFMRLRSRLVESNDEVEKPVSEENSFGAVKIDIPL

Entity 3 polymer

description	Tail sheath protein
formula_weight	54120.4 kDa
src_method	nat
entity_count	6

Polymer

type	polypeptide(L)
strand_id	A,C,E,Z,b,d

MAQDALSDGFVRLCIDPSLNFFGEGCKILVEGQITDDATAAENVVTCVNSELDLVERFGQGSVLTESLRKVFCMCKSGVSVYALPRADAAAAVSAVYTLTVTGTALTDGRVQLYMGEAEYSLDIGVDEGDTPTQIAAKIVAAISPDFPYEATAAAGVITLTARNGGTIGNHLSVIYTNLGSCTSVTPEGVTVAFAQTTPGSVNPEPNDYASVVNECCFAVYVLSSDDTDWQENLRDWIRSAWDCSKPQCFGHGYVFNKGTLGQVLADGDNSAELSRLALPTTYPVLPYLTNAAYGALSACSTCENPELNVQGQTYGLLSCINMPESCTPGWEFTEVTQLQNNGFVVSGPATTSGQGNFTSPYIYNDVTNYLRDEKNRPNATFRDASSRRLAAATGVALATFLQQFNGLAVFTKNTNIKTGIIGTNLRLMLGKIRKWASDNVGVLFSEFDNINEDIQLVSDFDVQPKCVGQPGVFHLNMRYRPPVRGARINVNLVPALFDNCDR

Entity 4 polymer

description	Structural protein
formula_weight	14503.3 kDa
src_method	nat
entity_count	6

Polymer

type	polypeptide(L)
strand_id	N,f,h,j,V,X

MACNKQNGVKNILITFTHCDTGEVIGPISHEQPDDTLPTYKTCAWTNTALTNGAVMRSASNATMTLPVVRDPRVPLAWYQGCAQIDAQVEKFDGTVMTLTEGAVTEPEESDGRAVTMTIIAAEIDELLPPGSLAAA

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	3.56 Å
resolution_method	—
num_particles	4936

fit	/app/data/saxs_computation/rk/9rks/9rks.fit
pddf	/app/data/pr_computation/rk/9rks/9rks.pr.out
profile	/app/data/saxs_computation/rk/9rks/9rks.dat

Agrobacterium phage 7-7-1 neck 2 + tail terminator + tail sheath + tail tube

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)