9ryx
Aquifex aeolicus lumazine synthase I125A mutant 11-pentamer cage
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ryx |
| deposition_date | 2025-07-15 |
| title | Aquifex aeolicus lumazine synthase I125A mutant 11-pentamer cage |
| keywords | protein cage, protein engineering, self-assembly, geometry, pentamer, encapsulation, BIOSYNTHETIC PROTEIN; BIOSYNTHETIC PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 65.81 Å |
| rg_electron | 64.55 Å |
| i0 | 11339500000.00 |
| molecular_weight | 915370.0 kDa |
| excluded_volume | 1152100 ų |
| envelope_volume | 1779900 ų |
| shell_volume | 215730 ų |
| envelope_diameter | 170.1 Å |
| shell_rg | 78.92 Å |
| envelope_rg | 60.30 Å |
| shape_rg | 64.51 Å |
| total_rg | 64.89 Å |
| total_atoms | 64515 |
| n_residues | 8470 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 163.3 Å |
| rg_real | 64.92 Å |
| rg_real_error | 0.37 Å |
| i0_real | 1.1340e+10 |
| i0_real_error | 2.0040e+08 |
| rg_reciprocal | 66.54 Å |
| i0_reciprocal | 11370000000.0000 |
| total_estimate | 0.6135 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 102.1 Å |
| skewness | -0.254 |
| kurtosis | -0.674 |
| angular_range | — – 0.1200 Å−1 |
| current_alpha | 0.0001 |
| highest_alpha | 7447000000.0000 |
| n_real_points | 25 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.982; Stabil: 1.000; Sysdev: 0.013; Positv: 1.000; Valcen: 0.985; Smooth: 0.000 |