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9si1

;Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation ;

Method: ELECTRON MICROSCOPY Dmax: 128.1 Å Quality: GOOD

SAXS Profile

SAXS profile for 9si1

P(r) Distribution

P(r) distribution for 9si1
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1. Structure Basics

entry_id9si1
deposition_date2025-08-28
last_revision2025-11-05
title;Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation ;
keywordsFerlin, otoferlin, multi-C2 domain, Ca2+-binding, membrane fusion, MEMBRANE PROTEIN; MEMBRANE PROTEIN
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier39.41 Å
rg_electron38.85 Å
i0445509000.00
molecular_weight172520.0 kDa
excluded_volume216000 ų
envelope_volume292480 ų
shell_volume61966 ų
envelope_diameter132.4 Å
shell_rg45.66 Å
envelope_rg38.01 Å
shape_rg38.86 Å
total_rg39.22 Å
total_atoms12135
n_residues1510
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax128.1 Å
rg_real39.28 Å
rg_real_error0.83 Å
i0_real4.4550e+08
i0_real_error6.8560e+06
rg_reciprocal39.36 Å
i0_reciprocal445500000.0000
total_estimate0.8947
solution_quality GOOD a GOOD solution
n_peaks1
r_peak_primary48.0 Å
skewness0.225
kurtosis-0.491
angular_range— – 0.2000 Å−1
current_alpha0.0002
highest_alpha64570000.0000
n_real_points41
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.913; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.887
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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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7. Files & Curves (10)