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9uom

Tacheng tick virus 1 nucleoprotein head domain

Method: X-RAY DIFFRACTION D_max: 64.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9uom
deposition_date	2025-04-26
last_revision	2026-04-29
title	Tacheng tick virus 1 nucleoprotein head domain
keywords	Nairovirus, nucleoprotein, VIRAL PROTEIN; VIRAL PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.13 Å
rg_electron	20.04 Å
i0	29554900.00
molecular_weight	42427.0 kDa
excluded_volume	53363 Å³
envelope_volume	61268 Å³
shell_volume	24639 Å³
envelope_diameter	66.7 Å
shell_rg	27.43 Å
envelope_rg	20.28 Å
shape_rg	20.01 Å
total_rg	21.05 Å
total_atoms	2984
n_residues	374
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	64.7 Å
rg_real	20.97 Å
rg_real_error	0.28 Å
i0_real	2.9550e+07
i0_real_error	3.6370e+05
rg_reciprocal	21.00 Å
i0_reciprocal	29560000.0000
total_estimate	0.8971
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.6 Å
skewness	0.098
kurtosis	-0.476
angular_range	— – 0.3750 Å⁻¹
current_alpha	0.0000
highest_alpha	6483000.0000
n_real_points	69
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.913; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.936

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Nucleoprotein
formula_weight	54702.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3448

MAPLPKSLLTFSDASGLDSWFKDFEAKNIMSEEYTNSKSFCFDLRMATQWKKLPTRAENDAMIAQLVHERLKTCAPIKEFAWTACDGMVERGLNWFDRNKDSETMTWAANYEALKGRLPTTAEVNQYQKAALQWRTDTNYAINKYTAAISDSVVKIYQVNNKIVTDIRDLLSDMVARRNKALGIKPGEERVPAEHVDSFSNWLKQGDWSAPCPWGDWEKKNKKGNSLIVTACAGVINRALFKEEELKERLKSLAGDASLASKTEGFDPKKCEDTAKILLDLYGKAKAFISGGDGSSQSGGFVQQGSALDTVFSSYFWAWKCGVKKDVFPALSSMLYALGKNPTGKTKIIKVLKASPYTWAHKMTEMFSTLSTDPIHMHPGVLTAGRLTTEMVASFGAFPVSDPSKAADGASSPRFLLNLKSSDMNPAATTVSRMFYEYRQGYPDWRDEEIVPVEHLLHQTFLSKLGPYVNVSQVQGNALAVKITEYIVTK

Source

organism	Tacheng Tick Virus 1
ncbi_taxonomy_id	1608083
host_organism	Escherichia coli

Entity 2 non-polymer

description	GLYCEROL
formula_weight	92.1 kDa
src_method	syn
entity_count	5

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	452

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6. Citations (1)

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length_a	114.260 Å
length_b	114.260 Å
length_c	54.863 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 65
int_tables_number	170
crystal_system	hexagonal

resolution	1.590 Å
resolution_low	37.400 Å
r_factor	0.1602
r_work	0.1593
r_free	0.1831

fit	/app/data/saxs_computation/uo/9uom/9uom.fit
pddf	/app/data/pr_computation/uo/9uom/9uom.pr.out
profile	/app/data/saxs_computation/uo/9uom/9uom.dat

Tacheng tick virus 1 nucleoprotein head domain

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction