Tacheng tick virus 1 nucleoprotein

Method: X-RAY DIFFRACTION D_max: 112.3 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9up8
deposition_date	2025-04-27
last_revision	2026-04-29
title	Tacheng tick virus 1 nucleoprotein
keywords	Nairovirus, Tacheng tick virus 1, Nucleoprotein, VIRAL PROTEIN; VIRAL PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	35.14 Å
rg_electron	34.68 Å
i0	165234000.00
molecular_weight	104410.0 kDa
excluded_volume	131170 Å³
envelope_volume	171960 Å³
shell_volume	41648 Å³
envelope_diameter	116.4 Å
shell_rg	40.98 Å
envelope_rg	33.85 Å
shape_rg	34.67 Å
total_rg	35.17 Å
total_atoms	7351
n_residues	934
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	112.3 Å
rg_real	35.05 Å
rg_real_error	0.78 Å
i0_real	1.6520e+08
i0_real_error	2.6340e+06
rg_reciprocal	35.11 Å
i0_reciprocal	165200000.0000
total_estimate	0.6875
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	44.9 Å
skewness	0.137
kurtosis	-0.676
angular_range	— – 0.2250 Å⁻¹
current_alpha	0.0001
highest_alpha	25520000.0000
n_real_points	46
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.935; Stabil: 1.000; Sysdev: 0.062; Positv: 1.000; Valcen: 0.997; Smooth: 0.944

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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length_a	154.557 Å
length_b	78.747 Å
length_c	92.636 Å
angle_alpha	90.00 °
angle_beta	107.60 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 1 2 1
int_tables_number	5
crystal_system	monoclinic

resolution	2.520 Å
resolution_low	50.000 Å
r_factor	0.2256
r_work	0.2233
r_free	0.2725

description	Nucleoprotein
formula_weight	54702.2 kDa
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	7351

Tacheng tick virus 1 nucleoprotein

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Tacheng Tick Virus 1
ncbi_taxonomy_id	1608083
host_organism	Escherichia coli

fit	/app/data/saxs_computation/up/9up8/9up8.fit
pddf	/app/data/pr_computation/up/9up8/9up8.pr.out
profile	/app/data/saxs_computation/up/9up8/9up8.dat