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9up1

Tacheng tick virus 1 nucleoprotein-Nucle acid complex

Method: X-RAY DIFFRACTION D_max: 110.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9up1
deposition_date	2025-04-27
last_revision	2026-04-29
title	Tacheng tick virus 1 nucleoprotein-Nucle acid complex
keywords	Nairovirus, Nucleprotein, Complex, VIRAL PROTEIN/DNA, VIRAL PROTEIN-DNA complex; VIRAL PROTEIN/DNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	33.61 Å
rg_electron	33.24 Å
i0	201898000.00
molecular_weight	111100.0 kDa
excluded_volume	137840 Å³
envelope_volume	174690 Å³
shell_volume	44563 Å³
envelope_diameter	122.3 Å
shell_rg	39.14 Å
envelope_rg	33.49 Å
shape_rg	33.21 Å
total_rg	33.77 Å
total_atoms	7793
n_residues	958
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	110.0 Å
rg_real	33.72 Å
rg_real_error	0.88 Å
i0_real	2.0190e+08
i0_real_error	3.0970e+06
rg_reciprocal	33.65 Å
i0_reciprocal	201900000.0000
total_estimate	0.8629
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	35.1 Å
skewness	0.489
kurtosis	-0.171
angular_range	— – 0.2350 Å⁻¹
current_alpha	0.0000
highest_alpha	47800000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.865; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.961; Smooth: 0.658

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Nucleoprotein
formula_weight	54702.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	7903

MAPLPKSLLTFSDASGLDSWFKDFEAKNIMSEEYTNSKSFCFDLRMATQWKKLPTRAENDAMIAQLVHERLKTCAPIKEFAWTACDGMVERGLNWFDRNKDSETMTWAANYEALKGRLPTTAEVNQYQKAALQWRTDTNYAINKYTAAISDSVVKIYQVNNKIVTDIRDLLSDMVARRNKALGIKPGEERVPAEHVDSFSNWLKQGDWSAPCPWGDWEKKNKKGNSLIVTACAGVINRALFKEEELKERLKSLAGDASLASKTEGFDPKKCEDTAKILLDLYGKAKAFISGGDGSSQSGGFVQQGSALDTVFSSYFWAWKCGVKKDVFPALSSMLYALGKNPTGKTKIIKVLKASPYTWAHKMTEMFSTLSTDPIHMHPGVLTAGRLTTEMVASFGAFPVSDPSKAADGASSPRFLLNLKSSDMNPAATTVSRMFYEYRQGYPDWRDEEIVPVEHLLHQTFLSKLGPYVNVSQVQGNALAVKITEYIVTK

Source

organism	Tacheng Tick Virus 1
ncbi_taxonomy_id	1608083
host_organism	Escherichia coli

Entity 2 polymer

description	;DNA (5'-D(PCPCPTPCPCPCPGPCPAPCPTPTP*C)-3') ;
formula_weight	3823.5 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	C

CCTCCCGCACTTC

Entity 3 polymer

description	;DNA (5'-D(PCPGPTPAPAPTPCPC)-3') ;
formula_weight	2386.6 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	D

CGTAATCC

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	110

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6. Citations (1)

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length_a	90.769 Å
length_b	60.242 Å
length_c	96.018 Å
angle_alpha	90.00 °
angle_beta	93.01 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	monoclinic

resolution	2.500 Å
resolution_low	33.420 Å
r_factor	0.2025
r_work	0.1990
r_free	0.2669

fit	/app/data/saxs_computation/up/9up1/9up1.fit
pddf	/app/data/pr_computation/up/9up1/9up1.pr.out
profile	/app/data/saxs_computation/up/9up1/9up1.dat

Tacheng tick virus 1 nucleoprotein-Nucle acid complex

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)