KCMF1 Zn-coordinating domains with RTGG peptide

entry_id	9upz
deposition_date	2025-04-29
title	KCMF1 Zn-coordinating domains with RTGG peptide
keywords	Complex, ZZ-domain, C2H2 Zn-finger domain, KCMF1, Arg/N-degron pathway, PEPTIDE BINDING PROTEIN, LIGASE; LIGASE
method	X-RAY DIFFRACTION

rg_guinier	17.02 Å
rg_electron	16.54 Å
i0	4786080.00
molecular_weight	14033.0 kDa
excluded_volume	16746 ų
envelope_volume	19846 ų
shell_volume	11194 ų
envelope_diameter	57.1 Å
shell_rg	20.60 Å
envelope_rg	16.56 Å
shape_rg	16.51 Å
total_rg	17.29 Å
total_atoms	1843
n_residues	127
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	58.4 Å
rg_real	17.14 Å
rg_real_error	0.44 Å
i0_real	4.7860e+06
i0_real_error	6.2600e+04
rg_reciprocal	17.12 Å
i0_reciprocal	4786000.0000
total_estimate	0.8351
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	16.1 Å
skewness	0.490
kurtosis	-0.364
angular_range	— – 0.4700 Å−1
current_alpha	0.0000
highest_alpha	1215000.0000
n_real_points	77
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.708; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.748; Smooth: 0.981

Unit Cell

length_a	97.347 Å
length_b	97.347 Å
length_c	97.347 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

Symmetry

space_group	P 43 3 2
int_tables_number	212
crystal_system	—

Refinement

resolution	1.710 Å
resolution_low	34.420 Å
r_factor	0.2094
r_work	0.2064
r_free	0.2357

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/up/9upz/pr_distribution.json
• pr_output /app/data/pr_computation/up/9upz/9upz.pr.out
• pr_plot /app/data/visualization/pr_computation/up/9upz/9upz_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/up/9upz/9upz.dat
• saxs_fit /app/data/saxs_computation/up/9upz/9upz.fit
• saxs_log /app/data/saxs_computation/up/9upz/9upz.log
• saxs_plot /app/data/visualization/saxs_computation/up/9upz/9upz_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/up/9upz/9upz.fit
pddf	/app/data/pr_computation/up/9upz/9upz.pr.out
profile	/app/data/saxs_computation/up/9upz/9upz.dat